Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 120.00258 * 2 1 4 4 H 1.48494 * 109.46964 * 239.99872 * 3 2 1 5 5 H 1.48496 * 109.46867 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46978 * 119.99640 * 3 2 1 7 7 C 1.37874 * 120.00139 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00524 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99802 * 359.97438 * 7 2 1 10 10 C 1.50699 * 109.47193 * 180.02562 * 9 7 2 11 11 C 1.38185 * 119.96318 * 265.00433 * 10 9 7 12 12 C 1.38136 * 120.14750 * 180.25745 * 11 10 9 13 13 C 1.38993 * 120.06931 * 359.48754 * 12 11 10 14 14 N 1.39672 * 120.03483 * 180.26072 * 13 12 11 15 15 C 1.38750 * 119.93076 * 0.53049 * 13 12 11 16 16 C 1.38797 * 119.85145 * 359.72527 * 15 13 12 17 17 N 1.39668 * 120.03807 * 179.97438 * 16 15 13 18 18 H 0.97003 * 120.00112 * 0.02562 * 1 2 3 19 19 H 1.09005 * 109.46993 * 60.00342 * 9 7 2 20 20 H 1.09000 * 109.47160 * 300.00205 * 9 7 2 21 21 H 1.08002 * 119.92272 * 359.97187 * 11 10 9 22 22 H 1.08001 * 119.95985 * 179.72299 * 12 11 10 23 23 H 0.96993 * 120.00562 * 180.26737 * 14 13 12 24 24 H 0.97001 * 119.99844 * 0.27090 * 14 13 12 25 25 H 1.08001 * 120.07254 * 179.74979 * 15 13 12 26 26 H 0.96990 * 120.00055 * 180.02562 * 17 16 15 27 27 H 0.96998 * 119.99847 * 0.02728 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2302 -3.6446 0.0027 11 6 2.5995 -4.2380 -1.1894 12 6 3.4927 -5.2916 -1.1924 13 6 4.0313 -5.7515 0.0036 14 7 4.9386 -6.8134 -0.0008 15 6 3.6624 -5.1582 1.2024 16 6 2.7606 -4.1032 1.2024 17 7 2.3861 -3.5034 2.4069 18 1 -0.4850 0.8401 -0.0004 19 1 0.6240 -2.5575 -0.8881 20 1 0.6246 -2.5563 0.8919 21 1 2.1852 -3.8801 -2.1203 22 1 3.7758 -5.7561 -2.1254 23 1 5.3112 -7.1365 0.8344 24 1 5.1961 -7.2278 -0.8392 25 1 4.0764 -5.5164 2.1334 26 1 1.7556 -2.7665 2.4063 27 1 2.7567 -3.8240 3.2440 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306942261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = -11.226955 kcal Electronic energy + Delta-G solvation = -11431.852822 eV Core-core repulsion = 9380.525114 eV Total energy + Delta-G solvation = -2051.327708 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.27007 -36.57909 -34.99544 -34.03712 -31.47371 -29.58243 -27.64705 -24.69222 -23.16704 -21.49988 -18.40632 -18.13012 -18.03627 -16.70272 -16.54650 -15.86511 -15.12723 -14.57509 -14.29708 -14.15321 -13.86159 -13.24869 -13.10535 -12.58490 -12.37889 -12.09237 -11.79753 -11.46191 -11.25445 -10.53251 -10.43347 -8.59709 -8.22594 -7.73944 -6.23804 0.90534 1.11509 1.41365 1.43338 1.51671 2.44307 3.09023 3.17402 3.31636 3.48044 4.26179 4.53886 4.68166 4.91564 5.06690 5.22024 5.37075 5.47514 5.59444 5.76935 5.86692 6.08218 6.22016 6.32805 6.74529 6.88370 6.91467 7.22122 7.28530 7.44363 8.96043 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.054425 B = 0.009557 C = 0.009299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.346370 B = 2929.165572 C = 3010.439480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.515 4.515 8 H 0.046 0.954 9 C 0.077 3.923 10 C -0.207 4.207 11 C -0.050 4.050 12 C -0.261 4.261 13 C 0.240 3.760 14 N -0.867 5.867 15 C -0.285 4.285 16 C 0.247 3.753 17 N -0.868 5.868 18 H 0.263 0.737 19 H -0.009 1.009 20 H 0.002 0.998 21 H 0.107 0.893 22 H 0.130 0.870 23 H 0.404 0.596 24 H 0.405 0.595 25 H 0.133 0.867 26 H 0.399 0.601 27 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.523 -10.562 2.351 13.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.192 4.192 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.554 4.554 8 H 0.065 0.935 9 C 0.040 3.960 10 C -0.213 4.213 11 C -0.070 4.070 12 C -0.285 4.285 13 C 0.134 3.866 14 N -0.408 5.408 15 C -0.313 4.313 16 C 0.140 3.860 17 N -0.407 5.407 18 H 0.072 0.928 19 H 0.009 0.991 20 H 0.020 0.980 21 H 0.125 0.875 22 H 0.147 0.853 23 H 0.233 0.767 24 H 0.234 0.766 25 H 0.151 0.849 26 H 0.229 0.771 27 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.356 -10.432 2.335 13.569 hybrid contribution 0.104 1.019 0.180 1.040 sum 8.460 -9.413 2.515 12.903 Atomic orbital electron populations 1.70074 1.07478 1.27638 1.51934 1.25844 0.95640 1.02645 0.95054 0.85603 0.78321 0.78788 0.78916 1.19830 1.20776 1.19390 1.21381 0.92680 0.91472 1.49832 0.93528 1.17731 0.92449 0.90903 0.94951 1.19733 1.06473 1.02291 0.92819 1.20609 0.95659 0.94269 0.96442 1.20385 1.07126 1.03919 0.97070 1.17392 0.88751 0.87731 0.92689 1.42243 1.49718 1.36815 1.12022 1.19972 1.09413 1.04154 0.97717 1.17493 0.91466 0.90680 0.86366 1.42531 1.52509 1.40348 1.05271 0.92817 0.99111 0.98004 0.87538 0.85252 0.76702 0.76578 0.84937 0.77150 0.76978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.37 13.29 21.45 0.28 -56.09 15 2 C 0.01 0.33 5.46 84.65 0.46 0.80 15 3 Si 0.96 44.96 29.54 68.60 2.03 46.99 15 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 7 C -0.52 -29.81 9.09 25.60 0.23 -29.57 15 8 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 9 C 0.08 4.21 4.53 29.10 0.13 4.34 15 10 C -0.21 -9.67 5.09 -19.71 -0.10 -9.78 15 11 C -0.05 -2.11 9.66 22.23 0.21 -1.90 15 12 C -0.26 -8.98 9.89 22.43 0.22 -8.75 15 13 C 0.24 7.47 6.75 38.20 0.26 7.73 15 14 N -0.87 -18.07 9.09 -51.42 -0.47 -18.53 15 15 C -0.28 -9.54 9.74 22.53 0.22 -9.32 15 16 C 0.25 9.99 6.73 38.20 0.26 10.24 15 17 N -0.87 -31.60 8.99 -51.42 -0.46 -32.06 15 18 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 19 H -0.01 -0.57 8.05 -2.38 -0.02 -0.58 15 20 H 0.00 0.10 6.80 -2.39 -0.02 0.09 15 21 H 0.11 4.45 8.06 -2.91 -0.02 4.43 15 22 H 0.13 3.69 8.06 -2.91 -0.02 3.67 15 23 H 0.40 6.58 8.84 -92.71 -0.82 5.76 15 24 H 0.40 6.67 8.84 -92.71 -0.82 5.85 15 25 H 0.13 3.63 8.06 -2.91 -0.02 3.60 15 26 H 0.40 16.32 6.93 -92.72 -0.64 15.68 15 27 H 0.40 11.33 8.84 -92.71 -0.82 10.51 15 Total: -1.00 -66.80 237.70 1.40 -65.40 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: -1.88 Total: 30.51 kcal Atomic # 6 Polarization: -38.11 SS G_CDS: 1.90 Total: -36.22 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -0.64 Total: -106.69 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -66.80 1.40 -65.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306942261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.177 kcal (2) G-P(sol) polarization free energy of solvation -66.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds