Wall clock time and date at job start Mon Mar 30 2020 01:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38126 * 120.03901 * 2 1 4 4 C 1.38264 * 120.07351 * 179.72421 * 3 2 1 5 5 C 1.38309 * 120.15307 * 0.25970 * 4 3 2 6 6 C 1.38077 * 120.07142 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.03467 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47417 * 265.00011 * 7 6 5 9 9 H 1.08000 * 120.00342 * 0.02562 * 8 7 6 10 10 C 1.37886 * 120.00044 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99848 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99961 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46949 * 89.99974 * 12 10 8 14 14 H 1.48493 * 109.47228 * 210.00106 * 12 10 8 15 15 H 1.48496 * 109.47388 * 330.00550 * 12 10 8 16 16 C 1.38898 * 120.04054 * 180.28086 * 2 1 3 17 17 N 1.39675 * 120.07050 * 359.97438 * 16 2 1 18 18 H 1.09000 * 109.47363 * 89.99555 * 1 2 3 19 19 H 1.09000 * 109.47097 * 209.99387 * 1 2 3 20 20 H 1.09006 * 109.46991 * 329.99411 * 1 2 3 21 21 H 1.08002 * 119.96463 * 0.02562 * 3 2 1 22 22 H 1.08005 * 119.92243 * 180.27759 * 4 3 2 23 23 H 1.07997 * 119.96292 * 180.02562 * 5 4 3 24 24 H 1.09000 * 109.47277 * 25.00768 * 7 6 5 25 25 H 1.09009 * 109.47174 * 145.00001 * 7 6 5 26 26 H 0.96998 * 119.99965 * 180.02562 * 11 10 8 27 27 H 0.96998 * 120.00154 * 180.29669 * 17 16 2 28 28 H 0.97001 * 119.99798 * 0.30179 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1957 0.0000 4 6 3.5810 1.1966 0.0058 5 6 4.2765 0.0011 0.0061 6 6 3.5915 -1.1978 0.0002 7 6 4.3501 -2.4999 0.0000 8 6 4.5019 -2.9927 -1.4160 9 1 4.0906 -2.4201 -2.2341 10 6 5.1669 -4.1742 -1.6673 11 7 5.6682 -4.8713 -0.6711 12 14 5.3545 -4.7854 -3.4224 13 1 6.6094 -4.2444 -4.0035 14 1 5.4064 -6.2694 -3.4269 15 1 4.1967 -4.3282 -4.2322 16 6 2.2023 -1.2024 -0.0059 17 7 1.5062 -2.4133 -0.0113 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5137 20 1 -0.3633 0.8900 0.5140 21 1 1.6584 2.1311 0.0004 22 1 4.1192 2.1330 0.0103 23 1 5.3564 0.0053 0.0110 24 1 5.3359 -2.3462 0.4389 25 1 3.8032 -3.2392 0.5853 26 1 6.1363 -5.7023 -0.8479 27 1 1.9928 -3.2524 -0.0111 28 1 0.5362 -2.4152 -0.0153 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307405680.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:02 Heat of formation + Delta-G solvation = -13.054799 kcal Electronic energy + Delta-G solvation = -11437.807414 eV Core-core repulsion = 9451.826355 eV Total energy + Delta-G solvation = -1985.981059 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.41707 -35.63890 -35.18536 -33.64197 -30.76142 -28.48674 -27.40388 -25.19100 -22.04104 -21.35995 -18.47667 -17.87034 -17.68597 -16.61882 -15.58578 -14.85696 -14.82702 -14.49026 -14.24496 -13.78549 -13.58519 -13.07995 -12.93675 -12.65771 -12.50776 -12.28266 -11.77113 -11.49715 -11.33063 -11.20237 -10.59311 -9.25481 -8.27782 -8.00943 -6.30762 0.72760 0.95198 1.38647 1.39363 1.50682 2.39958 3.11522 3.15300 3.31381 4.17176 4.20201 4.43851 4.58273 4.78974 4.91076 4.95195 4.96913 5.21898 5.27605 5.43732 5.47878 5.71484 5.79467 5.85661 6.09066 6.20014 6.30911 6.80718 6.82055 7.20682 7.37664 8.90183 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.047461 B = 0.010562 C = 0.009867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.820846 B = 2650.379072 C = 2836.954779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.181 4.181 3 C -0.094 4.094 4 C -0.181 4.181 5 C -0.105 4.105 6 C -0.151 4.151 7 C 0.071 3.929 8 C -0.518 4.518 9 H 0.047 0.953 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.961 3.039 13 H -0.275 1.275 14 H -0.279 1.279 15 H -0.269 1.269 16 C 0.201 3.799 17 N -0.870 5.870 18 H 0.067 0.933 19 H 0.062 0.938 20 H 0.082 0.918 21 H 0.146 0.854 22 H 0.135 0.865 23 H 0.105 0.895 24 H -0.007 1.007 25 H 0.006 0.994 26 H 0.264 0.736 27 H 0.398 0.602 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.217 8.605 0.517 12.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.186 4.186 3 C -0.112 4.112 4 C -0.201 4.201 5 C -0.124 4.124 6 C -0.156 4.156 7 C 0.034 3.966 8 C -0.556 4.556 9 H 0.065 0.935 10 C -0.191 4.191 11 N -0.569 5.569 12 Si 0.786 3.214 13 H -0.201 1.201 14 H -0.204 1.204 15 H -0.193 1.193 16 C 0.096 3.904 17 N -0.411 5.411 18 H 0.086 0.914 19 H 0.081 0.919 20 H 0.101 0.899 21 H 0.164 0.836 22 H 0.153 0.847 23 H 0.123 0.877 24 H 0.012 0.988 25 H 0.024 0.976 26 H 0.073 0.927 27 H 0.227 0.773 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -9.128 8.464 0.560 12.461 hybrid contribution 0.546 -1.084 -0.705 1.404 sum -8.581 7.380 -0.145 11.319 Atomic orbital electron populations 1.20564 0.89309 1.03076 1.02233 1.19708 0.97224 0.91269 1.10420 1.20990 0.93780 0.97360 0.99097 1.21038 0.94854 0.97202 1.07015 1.20896 0.99236 0.92332 0.99909 1.19995 0.92912 0.96623 1.06039 1.17833 0.93180 0.89760 0.95853 1.21320 1.35288 1.06136 0.92859 0.93513 1.25857 0.95118 0.96861 1.01282 1.70074 1.38070 1.15843 1.32931 0.85502 0.78663 0.77401 0.79798 1.20070 1.20405 1.19326 1.17671 0.90466 0.87308 0.94989 1.42565 1.08690 1.05286 1.84519 0.91393 0.91915 0.89920 0.83586 0.84671 0.87670 0.98844 0.97627 0.92666 0.77318 0.76873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 9.56 71.23 0.68 -1.55 15 2 C -0.18 -5.95 5.90 -19.73 -0.12 -6.07 15 3 C -0.09 -2.88 9.70 22.25 0.22 -2.66 15 4 C -0.18 -6.13 10.04 22.29 0.22 -5.91 15 5 C -0.10 -4.40 9.67 22.25 0.22 -4.18 15 6 C -0.15 -7.04 5.09 -19.74 -0.10 -7.14 15 7 C 0.07 3.86 4.54 29.10 0.13 3.99 15 8 C -0.52 -29.80 9.09 25.60 0.23 -29.56 15 9 H 0.05 2.71 7.74 -2.91 -0.02 2.69 15 10 C 0.01 0.39 5.46 84.66 0.46 0.85 15 11 N -0.93 -55.85 13.29 21.45 0.28 -55.57 15 12 Si 0.96 44.69 29.54 68.60 2.03 46.71 15 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 14 H -0.28 -12.51 7.11 99.48 0.71 -11.81 15 15 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 16 C 0.20 8.07 6.72 38.21 0.26 8.33 15 17 N -0.87 -31.59 8.89 -51.37 -0.46 -32.04 15 18 H 0.07 1.49 8.14 -2.39 -0.02 1.47 15 19 H 0.06 1.37 6.57 -2.39 -0.02 1.35 15 20 H 0.08 1.56 8.09 -2.38 -0.02 1.54 15 21 H 0.15 3.32 8.06 -2.91 -0.02 3.30 15 22 H 0.14 3.70 8.06 -2.91 -0.02 3.68 15 23 H 0.11 4.40 8.06 -2.91 -0.02 4.37 15 24 H -0.01 -0.40 8.05 -2.39 -0.02 -0.42 15 25 H 0.01 0.31 6.82 -2.38 -0.02 0.30 15 26 H 0.26 14.94 8.31 -92.71 -0.77 14.17 15 27 H 0.40 16.20 6.94 -92.71 -0.64 15.56 15 28 H 0.40 11.40 6.83 -92.71 -0.63 10.77 15 Total: -1.00 -65.01 240.46 3.95 -61.06 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: -0.11 Total: 23.73 kcal Atomic # 6 Polarization: -46.10 SS G_CDS: 2.20 Total: -43.90 kcal Atomic # 7 Polarization: -87.44 SS G_CDS: -0.17 Total: -87.61 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -65.01 3.95 -61.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307405680.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.004 kcal (2) G-P(sol) polarization free energy of solvation -65.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds