Wall clock time and date at job start Mon Mar 30 2020 02:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.38259 * 119.89831 * 269.72178 * 10 9 7 12 12 C 1.38274 * 120.18524 * 179.72479 * 11 10 9 13 13 C 1.38654 * 120.00331 * 0.55507 * 12 11 10 14 14 N 1.40020 * 120.09977 * 179.74781 * 13 12 11 15 15 C 1.39480 * 119.80645 * 359.72010 * 13 12 11 16 16 N 1.40017 * 120.09396 * 179.97438 * 15 13 12 17 17 C 1.38262 * 119.90462 * 89.99953 * 10 9 7 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08001 * 119.90638 * 0.02562 * 11 10 9 22 22 H 1.08007 * 119.99392 * 180.25111 * 12 11 10 23 23 H 0.97000 * 119.99876 * 179.97438 * 14 13 12 24 24 H 0.97004 * 119.99710 * 359.97349 * 14 13 12 25 25 H 0.97005 * 119.99941 * 180.02562 * 16 15 13 26 26 H 0.96997 * 120.00445 * 0.02673 * 16 15 13 27 27 H 1.08001 * 120.00170 * 359.97307 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0138 -2.6149 0.0107 11 6 4.2440 -3.2604 1.2115 12 6 4.6994 -4.5659 1.2230 13 6 4.9375 -5.2277 0.0281 14 7 5.4038 -6.5479 0.0373 15 6 4.7108 -4.5746 -1.1833 16 7 4.9497 -5.2369 -2.3936 17 6 4.2486 -3.2672 -1.1856 18 1 -0.4849 0.8400 0.0004 19 1 3.8786 -0.6821 -0.8838 20 1 3.8711 -0.6785 0.8962 21 1 4.0629 -2.7450 2.1432 22 1 4.8743 -5.0685 2.1629 23 1 5.5695 -7.0096 -0.7995 24 1 5.5610 -7.0008 0.8806 25 1 4.7919 -4.7812 -3.2353 26 1 5.2731 -6.1514 -2.3904 27 1 4.0716 -2.7587 -2.1218 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307441791.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:18:28 Heat of formation + Delta-G solvation = 19.792610 kcal Electronic energy + Delta-G solvation = -11327.777744 eV Core-core repulsion = 9277.795145 eV Total energy + Delta-G solvation = -2049.982599 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.99948 -34.91977 -33.48555 -32.55842 -30.11417 -28.25347 -26.21077 -22.56162 -21.82970 -19.88591 -17.26354 -16.65456 -16.42918 -15.79366 -14.87049 -14.13769 -13.51396 -13.17161 -12.96855 -12.90020 -12.27947 -11.50790 -11.42778 -10.67335 -10.39942 -10.29000 -10.18188 -9.87586 -9.42867 -9.08192 -8.48811 -7.46038 -6.35634 -5.97821 -3.95339 2.23879 2.45963 3.35186 3.42528 3.46835 4.07829 4.46587 4.50186 4.70228 5.34519 5.49129 5.93533 6.08437 6.26596 6.40479 6.60366 6.80546 7.07221 7.13727 7.18298 7.57363 7.65512 7.82174 7.86868 8.04473 8.19335 8.20100 8.62579 9.09629 9.63429 11.15430 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.060451 B = 0.009016 C = 0.008721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.074175 B = 3104.855419 C = 3209.945071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.018 3.982 10 C -0.035 4.035 11 C -0.130 4.130 12 C -0.153 4.153 13 C 0.116 3.884 14 N -0.893 5.893 15 C 0.142 3.858 16 N -0.890 5.890 17 C -0.153 4.153 18 H 0.262 0.738 19 H 0.019 0.981 20 H 0.026 0.974 21 H 0.115 0.885 22 H 0.110 0.890 23 H 0.384 0.616 24 H 0.391 0.609 25 H 0.394 0.606 26 H 0.384 0.616 27 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.133 -9.533 -1.553 14.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.545 4.545 8 H 0.091 0.909 9 C -0.019 4.019 10 C -0.037 4.037 11 C -0.151 4.151 12 C -0.176 4.176 13 C 0.014 3.986 14 N -0.438 5.438 15 C 0.039 3.961 16 N -0.434 5.434 17 C -0.177 4.177 18 H 0.072 0.928 19 H 0.038 0.962 20 H 0.044 0.956 21 H 0.133 0.867 22 H 0.128 0.872 23 H 0.211 0.789 24 H 0.219 0.781 25 H 0.222 0.778 26 H 0.211 0.789 27 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.926 -9.274 -1.475 14.407 hybrid contribution 0.402 0.293 -0.360 0.614 sum 11.327 -8.981 -1.835 14.572 Atomic orbital electron populations 1.69911 1.06263 1.26774 1.51378 1.25015 0.94716 0.98976 0.94747 0.86807 0.80456 0.83732 0.78525 1.20305 1.21411 1.18872 1.21017 0.88595 0.94534 1.50343 0.90854 1.18727 0.97156 0.89042 0.96947 1.19809 0.94699 0.97674 0.91533 1.20617 1.02440 0.94069 0.97929 1.20284 1.06584 0.95781 0.94998 1.17148 1.03117 0.85864 0.92488 1.42036 1.79801 1.12652 1.09262 1.17286 1.01562 0.92599 0.84676 1.42113 1.79617 1.16576 1.05076 1.20318 1.05895 0.92770 0.98673 0.92777 0.96242 0.95615 0.86698 0.87219 0.78934 0.78131 0.77786 0.78939 0.86615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.53 15 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 15 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 15 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 15 7 C -0.51 -14.83 9.65 -34.44 -0.33 -15.16 15 8 H 0.07 2.36 7.98 -52.49 -0.42 1.94 15 9 C 0.02 0.46 4.17 -29.03 -0.12 0.34 15 10 C -0.03 -0.78 5.07 -104.61 -0.53 -1.31 15 11 C -0.13 -2.63 9.69 -39.56 -0.38 -3.02 15 12 C -0.15 -2.68 9.89 -39.41 -0.39 -3.07 15 13 C 0.12 1.92 6.78 -83.50 -0.57 1.35 15 14 N -0.89 -10.78 9.09 32.54 0.30 -10.48 15 15 C 0.14 2.46 6.78 -83.50 -0.57 1.89 15 16 N -0.89 -11.61 9.09 32.54 0.30 -11.32 15 17 C -0.15 -3.09 9.54 -39.42 -0.38 -3.46 15 18 H 0.26 7.67 8.31 -40.82 -0.34 7.33 15 19 H 0.02 0.47 7.52 -51.93 -0.39 0.08 15 20 H 0.03 0.63 7.13 -51.93 -0.37 0.26 15 21 H 0.11 2.24 8.06 -52.49 -0.42 1.82 15 22 H 0.11 1.62 8.06 -52.48 -0.42 1.20 15 23 H 0.38 3.83 7.01 -40.82 -0.29 3.54 15 24 H 0.39 3.97 8.85 -40.82 -0.36 3.61 15 25 H 0.39 4.63 8.85 -40.82 -0.36 4.27 15 26 H 0.38 4.00 7.01 -40.82 -0.29 3.71 15 27 H 0.12 2.25 8.06 -52.49 -0.42 1.83 15 LS Contribution 234.21 15.07 3.53 3.53 Total: -1.00 -32.56 234.21 -6.05 -38.60 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -2.91 Total: 10.57 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -3.36 Total: -20.57 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: 1.37 Total: -49.32 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -32.56 -6.05 -38.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307441791.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.396 kcal (2) G-P(sol) polarization free energy of solvation -32.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds