Wall clock time and date at job start Mon Mar 30 2020 02:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38564 * 119.84492 * 2 1 4 4 C 1.39111 * 120.44452 * 180.02562 * 3 2 1 5 5 O 1.35907 * 119.93338 * 179.97438 * 4 3 2 6 6 C 1.38145 * 120.13307 * 0.25547 * 4 3 2 7 7 C 1.50696 * 120.14986 * 179.70157 * 6 4 3 8 8 C 1.40602 * 119.69016 * 359.43217 * 6 4 3 9 9 C 1.41408 * 120.21573 * 180.29767 * 8 6 4 10 10 H 1.08007 * 119.99699 * 25.70482 * 9 8 6 11 11 C 1.39932 * 119.99971 * 205.71064 * 9 8 6 12 12 N 1.30824 * 120.00135 * 15.33338 * 11 9 8 13 13 Si 1.86801 * 119.99774 * 195.33386 * 11 9 8 14 14 H 1.48493 * 109.47413 * 59.99949 * 13 11 9 15 15 H 1.48502 * 109.46923 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47167 * 299.99880 * 13 11 9 17 17 C 1.37622 * 119.84940 * 179.97438 * 2 1 3 18 18 H 1.08994 * 109.47253 * 90.00304 * 1 2 3 19 19 H 1.09004 * 109.46612 * 210.00066 * 1 2 3 20 20 H 1.08998 * 109.47230 * 330.00147 * 1 2 3 21 21 H 1.07999 * 119.77740 * 0.02562 * 3 2 1 22 22 H 0.96705 * 113.99489 * 90.00301 * 5 4 3 23 23 H 1.09009 * 109.47032 * 90.00091 * 7 6 4 24 24 H 1.09002 * 109.47189 * 209.99432 * 7 6 4 25 25 H 1.09003 * 109.47713 * 329.99753 * 7 6 4 26 26 H 0.97000 * 120.00131 * 179.97438 * 12 11 9 27 27 H 1.07999 * 120.07054 * 0.02562 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2019 0.0000 4 6 3.5876 1.2164 -0.0005 5 8 4.2534 2.4012 -0.0011 6 6 4.2936 0.0290 -0.0064 7 6 5.8005 0.0444 -0.0138 8 6 3.5997 -1.1938 0.0003 9 6 4.3112 -2.4159 0.0007 10 1 5.3130 -2.4572 0.4021 11 6 3.7173 -3.5714 -0.5190 12 7 2.6483 -3.4776 -1.2672 13 14 4.4510 -5.2479 -0.1443 14 1 4.4487 -5.4725 1.3236 15 1 3.6422 -6.3017 -0.8081 16 1 5.8458 -5.3024 -0.6512 17 6 2.1920 -1.1936 0.0005 18 1 -0.3633 -0.0001 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5138 21 1 1.6505 2.1336 0.0004 22 1 4.4465 2.7442 0.8823 23 1 6.1688 0.0460 1.0122 24 1 6.1703 -0.8409 -0.5311 25 1 6.1523 0.9390 -0.5276 26 1 2.2368 -4.2786 -1.6278 27 1 1.6507 -2.1282 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307468681.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:45 Heat of formation + Delta-G solvation = -63.703241 kcal Electronic energy + Delta-G solvation = -11696.845279 eV Core-core repulsion = 9610.949277 eV Total energy + Delta-G solvation = -2085.896002 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.23932 -37.61402 -35.54184 -33.91614 -30.54394 -29.72691 -27.37830 -25.27397 -22.94271 -21.23636 -19.16014 -17.94184 -17.12224 -16.21098 -16.04186 -15.61440 -14.70987 -14.22773 -13.85287 -13.58345 -13.34468 -13.30210 -13.17439 -12.82493 -12.56406 -12.20508 -11.90920 -11.69738 -11.63231 -11.00346 -10.83037 -9.21749 -8.88166 -8.59215 -6.35085 0.93147 0.96594 1.39100 1.49976 1.53310 2.21297 2.67993 3.57022 3.72947 4.39945 4.51114 4.64514 4.71672 4.90152 4.93125 4.99662 5.07655 5.17721 5.27646 5.34731 5.53554 5.73262 6.00163 6.04963 6.17606 6.32144 6.63149 6.91170 6.96391 7.23829 8.34882 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.014008 C = 0.010570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.211020 B = 1998.433368 C = 2648.453480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.078 4.078 3 C -0.264 4.264 4 C 0.117 3.883 5 O -0.511 6.511 6 C -0.247 4.247 7 C -0.072 4.072 8 C 0.090 3.910 9 C -0.489 4.489 10 H 0.081 0.919 11 C 0.033 3.967 12 N -0.825 5.825 13 Si 0.983 3.017 14 H -0.260 1.260 15 H -0.269 1.269 16 H -0.260 1.260 17 C -0.193 4.193 18 H 0.064 0.936 19 H 0.059 0.941 20 H 0.075 0.925 21 H 0.115 0.885 22 H 0.395 0.605 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.287 0.713 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.045 1.843 3.361 3.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.078 4.078 3 C -0.284 4.284 4 C 0.073 3.927 5 O -0.322 6.322 6 C -0.249 4.249 7 C -0.129 4.129 8 C 0.088 3.912 9 C -0.518 4.518 10 H 0.099 0.901 11 C -0.182 4.182 12 N -0.451 5.451 13 Si 0.803 3.197 14 H -0.184 1.184 15 H -0.193 1.193 16 H -0.184 1.184 17 C -0.212 4.212 18 H 0.082 0.918 19 H 0.078 0.922 20 H 0.094 0.906 21 H 0.133 0.867 22 H 0.251 0.749 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.153 1.652 2.600 3.084 hybrid contribution 0.217 -0.632 0.408 0.783 sum 0.064 1.020 3.008 3.177 Atomic orbital electron populations 1.20649 0.90516 1.02280 1.01793 1.19843 0.96503 0.92691 0.98786 1.20775 0.93007 0.97158 1.17463 1.18148 0.90011 0.84008 1.00539 1.84649 1.77590 1.35707 1.34263 1.20398 0.96589 0.92419 1.15520 1.20207 0.91390 1.00792 1.00493 1.17764 0.92507 0.92422 0.88522 1.19778 1.01967 0.93307 1.36726 0.90130 1.26788 0.94619 1.04895 0.91859 1.69877 1.19082 1.32788 1.23398 0.85247 0.79159 0.75606 0.79671 1.18393 1.19304 1.18412 1.21293 0.94492 0.96580 1.08855 0.91760 0.92202 0.90625 0.86719 0.74857 0.92640 0.93255 0.92592 0.90188 0.87536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.53 10.00 71.24 0.71 -2.81 15 2 C -0.08 -3.66 5.87 -19.93 -0.12 -3.78 15 3 C -0.26 -12.05 9.64 22.56 0.22 -11.83 15 4 C 0.12 5.43 6.67 22.46 0.15 5.58 15 5 O -0.51 -19.91 12.53 -92.50 -1.16 -21.06 15 6 C -0.25 -12.42 5.95 -19.31 -0.11 -12.53 15 7 C -0.07 -3.11 9.17 71.23 0.65 -2.45 15 8 C 0.09 4.95 5.57 -21.30 -0.12 4.83 15 9 C -0.49 -26.25 8.14 23.46 0.19 -26.06 15 10 H 0.08 4.14 6.87 -2.91 -0.02 4.12 15 11 C 0.03 1.67 5.19 85.25 0.44 2.11 15 12 N -0.83 -43.41 10.87 21.82 0.24 -43.17 15 13 Si 0.98 38.11 29.59 68.60 2.03 40.14 15 14 H -0.26 -9.81 7.11 99.48 0.71 -9.10 15 15 H -0.27 -9.88 7.11 99.48 0.71 -9.17 15 16 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 17 C -0.19 -10.30 8.33 22.74 0.19 -10.11 15 18 H 0.06 2.25 8.14 -2.39 -0.02 2.23 15 19 H 0.06 2.11 8.08 -2.38 -0.02 2.09 15 20 H 0.07 2.35 8.08 -2.39 -0.02 2.33 15 21 H 0.11 4.61 8.06 -2.91 -0.02 4.59 15 22 H 0.40 11.08 9.06 -74.05 -0.67 10.41 15 23 H 0.05 2.14 8.14 -2.38 -0.02 2.12 15 24 H 0.05 2.19 6.79 -2.39 -0.02 2.18 15 25 H 0.06 2.22 7.53 -2.39 -0.02 2.21 15 26 H 0.29 13.69 8.30 -92.71 -0.77 12.92 15 27 H 0.11 5.91 6.13 -2.91 -0.02 5.89 15 Total: -1.00 -61.22 234.01 3.82 -57.40 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.51 Total: 23.76 kcal Atomic # 6 Polarization: -59.26 SS G_CDS: 2.20 Total: -57.06 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.24 Total: -43.17 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -1.16 Total: -21.06 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -61.22 3.82 -57.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307468681.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.307 kcal (2) G-P(sol) polarization free energy of solvation -61.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds