Wall clock time and date at job start Mon Mar 30 2020 02:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00012 * 2 1 4 4 H 1.48502 * 109.47185 * 240.00580 * 3 2 1 5 5 H 1.48496 * 109.46999 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46877 * 120.00231 * 3 2 1 7 7 C 1.37878 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00068 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.46940 * 180.02562 * 9 7 2 11 11 C 1.38316 * 119.99973 * 264.99849 * 10 9 7 12 12 C 1.38209 * 120.19269 * 180.02562 * 11 10 9 13 13 C 1.38315 * 120.19220 * 359.97438 * 12 11 10 14 14 C 1.38614 * 119.99902 * 0.28080 * 13 12 11 15 15 N 1.40017 * 120.09853 * 179.72070 * 14 13 12 16 16 C 1.38612 * 119.99994 * 84.98369 * 10 9 7 17 17 N 1.40018 * 120.09965 * 0.03763 * 16 10 9 18 18 H 0.96993 * 120.00025 * 359.97438 * 1 2 3 19 19 H 1.09005 * 109.46758 * 60.00648 * 9 7 2 20 20 H 1.08994 * 109.47352 * 300.00624 * 9 7 2 21 21 H 1.07998 * 119.90238 * 359.97438 * 11 10 9 22 22 H 1.08000 * 119.90450 * 179.97438 * 12 11 10 23 23 H 1.08002 * 119.99684 * 179.97438 * 13 12 11 24 24 H 0.96998 * 119.99850 * 359.97438 * 15 14 13 25 25 H 0.96994 * 120.00471 * 179.97438 * 15 14 13 26 26 H 0.97005 * 119.99869 * 0.02562 * 17 16 10 27 27 H 0.96998 * 120.00045 * 179.97438 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2304 -3.6446 -0.0005 11 6 2.6005 -4.2381 -1.1938 12 6 3.4979 -5.2892 -1.1984 13 6 4.0316 -5.7533 -0.0098 14 6 3.6623 -5.1679 1.1911 15 7 4.1968 -5.6399 2.3961 16 6 2.7606 -4.1032 1.1953 17 7 2.3871 -3.5042 2.4045 18 1 -0.4850 0.8400 0.0004 19 1 0.6241 -2.5567 -0.8904 20 1 0.6247 -2.5571 0.8896 21 1 2.1863 -3.8797 -2.1246 22 1 3.7833 -5.7494 -2.1328 23 1 4.7323 -6.5752 -0.0170 24 1 4.8262 -6.3779 2.3913 25 1 3.9377 -5.2290 3.2356 26 1 1.7561 -2.7674 2.4063 27 1 2.7587 -3.8265 3.2405 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307558095.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:08 Heat of formation + Delta-G solvation = 16.443889 kcal Electronic energy + Delta-G solvation = -11537.280088 eV Core-core repulsion = 9487.152278 eV Total energy + Delta-G solvation = -2050.127811 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.91797 -34.34654 -33.77009 -32.48964 -29.85613 -27.13574 -26.64305 -23.22474 -20.94421 -20.14411 -17.15512 -16.31582 -16.09146 -15.56055 -14.74668 -14.39735 -13.47082 -13.00845 -12.94025 -12.45911 -11.99510 -11.31994 -11.05247 -10.83114 -10.46785 -10.33860 -10.02028 -9.78827 -9.37796 -9.24561 -8.37580 -7.17676 -6.22528 -5.96999 -4.02331 2.40884 2.51719 3.34156 3.38247 3.42223 4.29771 4.45726 4.78893 4.87867 5.34502 5.63263 5.91193 6.17190 6.34356 6.51776 6.83304 6.98871 7.11098 7.40195 7.57992 7.73585 7.83358 7.97287 8.02983 8.20722 8.38791 8.49921 8.66669 9.03770 9.61219 11.09980 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047891 B = 0.010526 C = 0.009839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.523097 B = 2659.562448 C = 2845.013456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.058 3.942 10 C -0.077 4.077 11 C -0.129 4.129 12 C -0.140 4.140 13 C -0.179 4.179 14 C 0.130 3.870 15 N -0.891 5.891 16 C 0.151 3.849 17 N -0.880 5.880 18 H 0.261 0.739 19 H 0.027 0.973 20 H 0.023 0.977 21 H 0.112 0.888 22 H 0.106 0.894 23 H 0.105 0.895 24 H 0.390 0.610 25 H 0.386 0.614 26 H 0.408 0.592 27 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.842 -8.649 3.395 10.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.074 0.926 9 C 0.021 3.979 10 C -0.082 4.082 11 C -0.149 4.149 12 C -0.161 4.161 13 C -0.202 4.202 14 C 0.027 3.973 15 N -0.435 5.435 16 C 0.046 3.954 17 N -0.424 5.424 18 H 0.071 0.929 19 H 0.045 0.955 20 H 0.041 0.959 21 H 0.130 0.870 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.217 0.783 25 H 0.213 0.787 26 H 0.240 0.760 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.651 -8.505 3.257 10.718 hybrid contribution 0.604 0.990 0.641 1.326 sum 6.255 -7.514 3.899 10.526 Atomic orbital electron populations 1.69950 1.05955 1.26750 1.50911 1.25013 0.94834 0.99103 0.95457 0.86635 0.79521 0.83059 0.78664 1.20218 1.21367 1.20377 1.21077 0.93019 0.89939 1.50318 0.92641 1.18128 0.92419 0.89576 0.97806 1.19979 0.99877 0.97973 0.90357 1.20661 0.99796 0.97110 0.97336 1.20519 1.00099 0.99002 0.96431 1.20086 1.05519 1.03396 0.91217 1.17278 0.97396 0.95867 0.86796 1.42079 1.54197 1.41936 1.05332 1.17184 0.96937 0.93699 0.87594 1.42304 1.54099 1.41790 1.04156 0.92921 0.95468 0.95922 0.86980 0.87609 0.87682 0.78318 0.78681 0.76001 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 13.29 55.43 0.74 -25.63 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 15 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 15 7 C -0.51 -14.16 9.09 -34.44 -0.31 -14.47 15 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 15 9 C 0.06 1.50 4.54 -29.03 -0.13 1.37 15 10 C -0.08 -1.75 5.08 -104.45 -0.53 -2.28 15 11 C -0.13 -2.69 9.67 -39.56 -0.38 -3.07 15 12 C -0.14 -2.54 10.04 -39.56 -0.40 -2.93 15 13 C -0.18 -3.09 9.89 -39.41 -0.39 -3.48 15 14 C 0.13 2.32 6.78 -83.50 -0.57 1.75 15 15 N -0.89 -12.01 9.09 32.54 0.30 -11.72 15 16 C 0.15 3.08 6.76 -83.50 -0.56 2.52 15 17 N -0.88 -16.06 8.99 32.54 0.29 -15.76 15 18 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 19 H 0.03 0.75 8.05 -51.93 -0.42 0.33 15 20 H 0.02 0.60 6.81 -51.93 -0.35 0.25 15 21 H 0.11 2.27 8.06 -52.49 -0.42 1.85 15 22 H 0.11 1.62 8.06 -52.49 -0.42 1.20 15 23 H 0.11 1.52 8.06 -52.49 -0.42 1.09 15 24 H 0.39 4.30 8.85 -40.82 -0.36 3.94 15 25 H 0.39 4.62 7.01 -40.82 -0.29 4.33 15 26 H 0.41 8.18 6.94 -40.82 -0.28 7.90 15 27 H 0.38 5.52 7.01 -40.82 -0.29 5.24 15 LS Contribution 234.42 15.07 3.53 3.53 Total: -1.00 -30.43 234.42 -6.33 -36.76 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -2.80 Total: 15.22 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -3.37 Total: -19.09 kcal Atomic # 7 Polarization: -54.43 SS G_CDS: 1.32 Total: -53.11 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.53 Total: 3.53 kcal Total: -30.43 -6.33 -36.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307558095.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.208 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds