Wall clock time and date at job start Mon Mar 30 2020 01:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38528 * 119.78973 * 2 1 4 4 C 1.37640 * 120.32314 * 180.02562 * 3 2 1 5 5 C 1.40779 * 119.89828 * 359.96928 * 4 3 2 6 6 C 1.41412 * 120.21037 * 180.02562 * 5 4 3 7 7 H 1.08002 * 120.00122 * 205.43867 * 6 5 4 8 8 C 1.39928 * 119.99611 * 25.43581 * 6 5 4 9 9 N 1.30825 * 120.00129 * 15.35557 * 8 6 5 10 10 Si 1.86803 * 119.99469 * 195.35367 * 8 6 5 11 11 H 1.48495 * 109.47391 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47081 * 120.00374 * 10 8 6 13 13 H 1.48507 * 109.46811 * 239.99759 * 10 8 6 14 14 C 1.40569 * 119.58287 * 359.76403 * 5 4 3 15 15 C 1.50703 * 120.16504 * 180.26936 * 14 5 4 16 16 C 1.38318 * 119.67305 * 0.52880 * 14 5 4 17 17 N 1.39690 * 119.94985 * 179.71417 * 16 14 5 18 18 H 1.09002 * 109.47425 * 269.98161 * 1 2 3 19 19 H 1.09003 * 109.46907 * 29.98037 * 1 2 3 20 20 H 1.09003 * 109.47158 * 149.97908 * 1 2 3 21 21 H 1.08001 * 119.83358 * 359.97438 * 3 2 1 22 22 H 1.08002 * 120.05137 * 180.02562 * 4 3 2 23 23 H 0.97004 * 119.99957 * 180.02562 * 9 8 6 24 24 H 1.09002 * 109.46670 * 270.26410 * 15 14 5 25 25 H 1.09002 * 109.46785 * 30.25776 * 15 14 5 26 26 H 1.08996 * 109.47139 * 150.26119 * 15 14 5 27 27 H 0.96994 * 119.99930 * 179.72771 * 17 16 14 28 28 H 0.96999 * 119.99440 * 359.45730 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2022 0.0000 4 6 3.5716 1.2150 -0.0005 5 6 4.2846 0.0012 -0.0004 6 6 5.6987 0.0066 -0.0004 7 1 6.2420 -0.8359 -0.4021 8 6 6.3941 1.1038 0.5200 9 7 5.7715 1.9775 1.2688 10 14 8.2113 1.3208 0.1455 11 1 8.6756 0.2051 -0.7174 12 1 8.4208 2.6111 -0.5591 13 1 8.9819 1.3192 1.4150 14 6 3.5821 -1.2164 0.0053 15 6 4.3322 -2.5234 0.0116 16 6 2.1990 -1.2089 -0.0004 17 7 1.4950 -2.4154 -0.0008 18 1 -0.3634 -0.0003 1.0277 19 1 -0.3633 0.8902 -0.5135 20 1 -0.3634 -0.8898 -0.5142 21 1 1.6491 2.1340 -0.0004 22 1 4.1037 2.1549 -0.0001 23 1 6.2535 2.7382 1.6292 24 1 4.5173 -2.8410 -1.0146 25 1 5.2829 -2.3942 0.5289 26 1 3.7391 -3.2802 0.5248 27 1 0.5251 -2.4110 -0.0008 28 1 1.9763 -3.2576 -0.0051 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575718118.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:04 Heat of formation + Delta-G solvation = -14.630349 kcal Electronic energy + Delta-G solvation = -11610.562138 eV Core-core repulsion = 9624.512759 eV Total energy + Delta-G solvation = -1986.049380 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 191.101 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.93371 -36.26087 -34.45367 -33.64227 -30.20920 -29.06492 -27.16591 -25.32836 -21.89118 -21.15950 -19.07246 -17.81222 -17.00982 -16.28450 -15.33816 -14.80077 -14.65365 -14.48476 -13.76949 -13.74996 -13.37636 -13.12807 -12.81983 -12.49707 -12.42453 -12.20649 -12.03360 -11.40073 -11.18636 -11.05374 -10.66175 -9.00715 -8.53752 -7.87928 -6.23766 1.04721 1.37422 1.40522 1.54584 1.59833 2.24484 2.83040 3.42597 3.83192 4.46239 4.55268 4.75670 4.76540 4.99101 5.02389 5.07627 5.12483 5.25142 5.31506 5.48221 5.57800 5.79648 6.11074 6.16621 6.28481 6.42193 6.71841 6.96392 7.08358 7.27258 7.39057 8.42711 Molecular weight = 191.10amu Principal moments of inertia in cm(-1) A = 0.052809 B = 0.012163 C = 0.010169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.084286 B = 2301.518326 C = 2752.677732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.283 4.283 3 C -0.082 4.082 4 C -0.231 4.231 5 C 0.107 3.893 6 C -0.491 4.491 7 H 0.077 0.923 8 C 0.032 3.968 9 N -0.829 5.829 10 Si 0.980 3.020 11 H -0.257 1.257 12 H -0.267 1.267 13 H -0.267 1.267 14 C -0.288 4.288 15 C -0.066 4.066 16 C 0.229 3.771 17 N -0.875 5.875 18 H 0.049 0.951 19 H 0.055 0.945 20 H 0.062 0.938 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.284 0.716 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.058 0.942 27 H 0.397 0.603 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -4.474 -1.703 6.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.288 4.288 3 C -0.101 4.101 4 C -0.252 4.252 5 C 0.105 3.895 6 C -0.521 4.521 7 H 0.095 0.905 8 C -0.182 4.182 9 N -0.456 5.456 10 Si 0.801 3.199 11 H -0.181 1.181 12 H -0.192 1.192 13 H -0.192 1.192 14 C -0.295 4.295 15 C -0.123 4.123 16 C 0.126 3.874 17 N -0.419 5.419 18 H 0.068 0.932 19 H 0.075 0.925 20 H 0.081 0.919 21 H 0.119 0.881 22 H 0.112 0.888 23 H 0.094 0.906 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.227 0.773 28 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.590 -4.226 -1.556 5.759 hybrid contribution 0.699 0.249 0.049 0.743 sum -2.892 -3.978 -1.507 5.143 Atomic orbital electron populations 1.20261 0.90640 1.01509 1.00528 1.19176 0.95983 0.91417 1.22231 1.20601 0.93887 0.96397 0.99195 1.21146 0.93389 0.98042 1.12634 1.17636 0.93632 0.91007 0.87265 1.19811 0.92008 1.03401 1.36891 0.90538 1.26770 1.05310 0.94098 0.92036 1.69939 1.40129 1.11458 1.24043 0.85196 0.76419 0.79217 0.79050 1.18088 1.19191 1.19201 1.19633 0.91902 0.95604 1.22311 1.20142 0.98884 0.93519 0.99786 1.17220 0.90255 0.86482 0.93486 1.42355 1.08431 1.04479 1.86667 0.93183 0.92549 0.91935 0.88081 0.88751 0.90590 0.93700 0.93656 0.92314 0.77263 0.77453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.41 9.56 71.24 0.68 -1.73 15 2 C -0.28 -12.53 5.92 -19.54 -0.12 -12.64 15 3 C -0.08 -4.03 9.66 22.20 0.21 -3.82 15 4 C -0.23 -12.94 8.68 22.75 0.20 -12.75 15 5 C 0.11 6.04 5.57 -21.31 -0.12 5.92 15 6 C -0.49 -27.25 8.13 23.46 0.19 -27.06 15 7 H 0.08 4.08 6.87 -2.91 -0.02 4.06 15 8 C 0.03 1.66 5.19 85.25 0.44 2.10 15 9 N -0.83 -45.37 10.87 21.82 0.24 -45.13 15 10 Si 0.98 39.62 29.59 68.60 2.03 41.65 15 11 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 12 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 13 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 14 C -0.29 -14.31 5.96 -19.28 -0.11 -14.42 15 15 C -0.07 -2.77 8.95 71.24 0.64 -2.13 15 16 C 0.23 10.12 6.70 38.16 0.26 10.37 15 17 N -0.88 -28.85 8.88 -51.49 -0.46 -29.31 15 18 H 0.05 1.56 8.14 -2.39 -0.02 1.54 15 19 H 0.06 1.74 8.08 -2.39 -0.02 1.72 15 20 H 0.06 1.77 6.52 -2.39 -0.02 1.75 15 21 H 0.10 4.48 8.06 -2.91 -0.02 4.45 15 22 H 0.09 5.56 6.13 -2.91 -0.02 5.54 15 23 H 0.28 14.04 8.30 -92.71 -0.77 13.27 15 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.04 1.99 6.79 -2.39 -0.02 1.97 15 26 H 0.06 2.05 6.55 -2.39 -0.02 2.03 15 27 H 0.40 10.89 6.80 -92.71 -0.63 10.26 15 28 H 0.40 11.56 6.81 -92.71 -0.63 10.92 15 Total: -1.00 -62.46 232.16 4.00 -58.46 By element: Atomic # 1 Polarization: 30.57 SS G_CDS: -0.08 Total: 30.50 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 2.27 Total: -56.16 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -0.22 Total: -74.44 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Total: -62.46 4.00 -58.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575718118.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.826 kcal (2) G-P(sol) polarization free energy of solvation -62.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds