Wall clock time and date at job start Mon Mar 30 2020 01:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 115.54849 * 2 1 4 4 C 1.53002 * 117.49806 * 214.29027 * 2 1 3 5 5 F 1.39901 * 117.50051 * 0.02562 * 4 2 1 6 6 Cl 1.80302 * 117.49544 * 145.02307 * 4 2 1 7 7 C 1.52998 * 117.49766 * 145.66701 * 2 1 3 8 8 C 1.52995 * 117.50088 * 0.02562 * 7 2 1 9 9 C 1.50705 * 117.49492 * 215.00239 * 7 2 1 10 10 H 1.07997 * 120.00189 * 245.14825 * 9 7 2 11 11 C 1.37877 * 119.99897 * 65.15916 * 9 7 2 12 12 N 1.31515 * 119.99973 * 5.22293 * 11 9 7 13 13 Si 1.86802 * 120.00022 * 185.23464 * 11 9 7 14 14 H 1.48502 * 109.47025 * 59.98851 * 13 11 9 15 15 H 1.48491 * 109.47256 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46825 * 299.99596 * 13 11 9 17 17 H 1.08993 * 109.47612 * 274.33405 * 1 2 3 18 18 H 1.09004 * 109.47244 * 154.33130 * 1 2 3 19 19 H 1.08999 * 109.47166 * 34.33624 * 1 2 3 20 20 H 1.08998 * 109.47547 * 54.90517 * 8 7 2 21 21 H 1.09003 * 109.47350 * 174.91006 * 8 7 2 22 22 H 1.09008 * 109.47140 * 294.90820 * 8 7 2 23 23 H 0.97004 * 119.99582 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1213 -0.7646 5 9 1.4340 -2.0678 -1.4107 6 17 3.7832 -0.7149 -1.5972 7 6 2.2364 -1.1207 0.7654 8 6 1.3588 -2.1559 1.4718 9 6 3.5290 -0.7803 1.4616 10 1 4.4531 -1.2356 1.1374 11 6 3.5317 0.1122 2.5125 12 7 2.3958 0.5877 2.9743 13 14 5.1488 0.6461 3.2802 14 1 5.9931 1.3023 2.2498 15 1 4.8808 1.6034 4.3833 16 1 5.8580 -0.5429 3.8175 17 1 -0.3634 0.0777 1.0246 18 1 -0.3634 -0.9263 -0.4452 19 1 -0.3633 0.8486 -0.5796 20 1 0.6668 -2.5961 0.7539 21 1 1.9889 -2.9379 1.8955 22 1 0.7955 -1.6712 2.2692 23 1 2.3978 1.2159 3.7134 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669380732.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:05 Heat of formation + Delta-G solvation = -55.982531 kcal Electronic energy + Delta-G solvation = -10539.403517 eV Core-core repulsion = 8327.949156 eV Total energy + Delta-G solvation = -2211.454362 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 192.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.73997 -38.71569 -36.56556 -34.13589 -30.34294 -28.38490 -26.92004 -21.83621 -20.69437 -18.58366 -17.11758 -16.89598 -16.25100 -15.76152 -14.89545 -14.19917 -13.66148 -13.26726 -13.22548 -13.03576 -12.81699 -12.77052 -12.66370 -12.35591 -12.20756 -11.81206 -11.38951 -10.66000 -10.22444 -10.02019 -8.13763 -6.23535 0.91913 1.46339 1.48200 1.54656 2.42602 2.80552 3.11760 3.45997 3.98904 4.05853 4.51627 4.75963 4.83403 4.92916 5.04642 5.22174 5.26591 5.44697 5.69730 5.79009 6.24424 6.77476 7.43566 8.94613 Molecular weight = 192.04amu Principal moments of inertia in cm(-1) A = 0.040070 B = 0.017304 C = 0.014080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.615593 B = 1617.747300 C = 1988.115883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.116 4.116 3 H 0.095 0.905 4 C 0.068 3.932 5 F -0.169 7.169 6 Cl -0.139 7.139 7 C 0.054 3.946 8 C -0.101 4.101 9 C -0.511 4.511 10 H 0.060 0.940 11 C 0.038 3.962 12 N -0.898 5.898 13 Si 0.947 3.053 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.272 1.272 17 H 0.065 0.935 18 H 0.060 0.940 19 H 0.070 0.930 20 H 0.048 0.952 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 -0.935 -3.825 4.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.136 4.136 3 H 0.113 0.887 4 C 0.025 3.975 5 F -0.149 7.149 6 Cl -0.112 7.112 7 C 0.053 3.947 8 C -0.158 4.158 9 C -0.548 4.548 10 H 0.079 0.921 11 C -0.164 4.164 12 N -0.534 5.534 13 Si 0.773 3.227 14 H -0.201 1.201 15 H -0.208 1.208 16 H -0.197 1.197 17 H 0.084 0.916 18 H 0.079 0.921 19 H 0.089 0.911 20 H 0.067 0.933 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.797 -0.815 -3.773 4.258 hybrid contribution 0.906 0.305 0.163 0.970 sum -0.891 -0.510 -3.611 3.754 Atomic orbital electron populations 1.21246 0.91147 1.02171 1.02330 1.23362 0.96241 0.94836 0.99122 0.88681 1.24858 0.84340 0.96443 0.91906 1.92752 1.72520 1.66178 1.83441 1.98670 1.36884 1.93827 1.81832 1.20264 0.96598 0.94307 0.83534 1.21227 0.97942 0.97197 0.99483 1.20496 0.91857 1.26501 1.15977 0.92141 1.25474 0.98942 0.95476 0.96510 1.70050 1.26393 1.31061 1.25907 0.85775 0.80638 0.78282 0.77971 1.20094 1.20815 1.19716 0.91647 0.92121 0.91076 0.93297 0.93358 0.92371 0.92712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.06 9.16 71.98 0.66 -3.40 14 2 C -0.12 -5.04 5.69 -10.79 -0.06 -5.11 14 3 H 0.09 4.46 8.14 -2.38 -0.02 4.44 14 4 C 0.07 2.96 4.26 30.60 0.13 3.09 14 5 F -0.17 -7.00 15.44 44.97 0.69 -6.30 14 6 Cl -0.14 -5.82 28.34 -2.72 -0.08 -5.90 14 7 C 0.05 2.57 1.85 -52.93 -0.10 2.47 14 8 C -0.10 -4.38 8.83 71.98 0.64 -3.75 14 9 C -0.51 -26.43 7.89 25.60 0.20 -26.23 14 10 H 0.06 3.19 7.71 -2.91 -0.02 3.17 14 11 C 0.04 1.96 5.42 84.65 0.46 2.41 14 12 N -0.90 -47.41 13.10 21.45 0.28 -47.13 14 13 Si 0.95 41.61 29.54 68.60 2.03 43.64 14 14 H -0.28 -12.08 7.11 99.48 0.71 -11.37 14 15 H -0.28 -12.15 7.11 99.48 0.71 -11.44 14 16 H -0.27 -11.73 7.11 99.48 0.71 -11.02 14 17 H 0.06 2.44 8.14 -2.39 -0.02 2.42 14 18 H 0.06 2.07 6.79 -2.39 -0.02 2.06 14 19 H 0.07 2.22 8.14 -2.39 -0.02 2.20 14 20 H 0.05 1.90 6.80 -2.39 -0.02 1.88 14 21 H 0.05 2.07 8.12 -2.39 -0.02 2.05 14 22 H 0.06 2.60 8.14 -2.38 -0.02 2.58 14 23 H 0.26 13.40 8.31 -92.71 -0.77 12.63 14 Total: -1.00 -52.67 221.14 6.05 -46.62 By element: Atomic # 1 Polarization: -1.61 SS G_CDS: 1.20 Total: -0.41 kcal Atomic # 6 Polarization: -32.43 SS G_CDS: 1.93 Total: -30.51 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.28 Total: -47.13 kcal Atomic # 9 Polarization: -7.00 SS G_CDS: 0.69 Total: -6.30 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 2.03 Total: 43.64 kcal Atomic # 17 Polarization: -5.82 SS G_CDS: -0.08 Total: -5.90 kcal Total: -52.67 6.05 -46.62 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669380732.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.364 kcal (2) G-P(sol) polarization free energy of solvation -52.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds