Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 115.56130 * 2 1 4 4 C 1.53073 * 117.48871 * 145.71178 * 2 1 3 5 5 C 1.53002 * 117.51317 * 214.96187 * 4 2 1 6 6 C 1.50698 * 117.51642 * 0.02562 * 4 2 1 7 7 H 1.08000 * 120.00317 * 97.44100 * 6 4 2 8 8 C 1.37876 * 119.99751 * 277.43552 * 6 4 2 9 9 N 1.31513 * 120.00481 * 3.64900 * 8 6 4 10 10 Si 1.86811 * 120.00097 * 183.65395 * 8 6 4 11 11 H 1.48500 * 109.46764 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47336 * 119.99917 * 10 8 6 13 13 H 1.48501 * 109.47049 * 240.00381 * 10 8 6 14 14 C 1.52991 * 59.98690 * 107.48272 * 4 2 1 15 15 F 1.39900 * 117.50001 * 252.49715 * 14 4 2 16 16 Cl 1.80308 * 117.50228 * 107.49507 * 14 4 2 17 17 H 1.08998 * 109.47232 * 154.29559 * 1 2 3 18 18 H 1.08993 * 109.46909 * 274.29741 * 1 2 3 19 19 H 1.09001 * 109.46554 * 34.29981 * 1 2 3 20 20 H 1.09001 * 109.46937 * 295.98025 * 5 4 2 21 21 H 1.08999 * 109.47023 * 55.97367 * 5 4 2 22 22 H 1.08994 * 109.47821 * 175.97729 * 5 4 2 23 23 H 0.96998 * 120.00625 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2366 -1.1219 0.7650 5 6 3.5494 -0.7778 1.4715 6 6 1.3724 -2.1422 1.4600 7 1 1.1622 -3.0876 0.9818 8 6 0.8500 -1.8689 2.7063 9 7 1.0460 -0.6912 3.2577 10 14 -0.1362 -3.1716 3.6120 11 1 -0.2122 -4.4008 2.7821 12 1 0.5267 -3.4857 4.9031 13 1 -1.5076 -2.6638 3.8702 14 6 2.2364 -1.1211 -0.7649 15 9 1.4339 -2.0673 -1.4113 16 17 3.7832 -0.7145 -1.5975 17 1 -0.3633 -0.9259 -0.4457 18 1 -0.3633 0.0770 1.0247 19 1 -0.3632 0.8490 -0.5791 20 1 4.2976 -0.4959 0.7307 21 1 3.3859 0.0536 2.1571 22 1 3.8999 -1.6457 2.0299 23 1 0.6781 -0.4987 4.1344 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000669380735.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -41.640175 kcal Electronic energy + Delta-G solvation = -10572.146010 eV Core-core repulsion = 8361.313579 eV Total energy + Delta-G solvation = -2210.832430 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 192.041 amu Computer time = 0.07 seconds Orbital eigenvalues (eV) -46.80764 -36.97128 -34.99332 -32.15346 -28.96877 -25.65705 -25.38866 -19.99562 -19.33012 -16.09942 -15.63462 -15.08075 -14.39530 -13.84815 -12.77495 -12.46628 -12.01325 -11.81991 -11.49688 -11.16920 -10.99105 -10.90291 -10.80962 -10.58431 -10.38499 -10.08990 -9.46412 -8.78869 -8.43618 -8.26876 -6.20316 -4.25753 2.47894 3.21603 3.30700 3.36052 4.27811 4.58743 5.08009 5.25112 5.74971 5.95584 6.27262 6.57420 6.68139 6.71834 6.88864 6.95754 7.14098 7.35441 7.52954 7.76317 8.14379 8.74991 9.39042 10.88578 Molecular weight = 192.04amu Principal moments of inertia in cm(-1) A = 0.052112 B = 0.014409 C = 0.013836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.170983 B = 1942.702615 C = 2023.229526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.135 4.135 3 H 0.098 0.902 4 C 0.087 3.913 5 C -0.109 4.109 6 C -0.501 4.501 7 H 0.069 0.931 8 C 0.078 3.922 9 N -0.875 5.875 10 Si 0.896 3.104 11 H -0.271 1.271 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.072 3.928 15 F -0.160 7.160 16 Cl -0.168 7.168 17 H 0.055 0.945 18 H 0.078 0.922 19 H 0.033 0.967 20 H 0.039 0.961 21 H 0.065 0.935 22 H 0.051 0.949 23 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 1.160 -3.614 3.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.155 4.155 3 H 0.116 0.884 4 C 0.085 3.915 5 C -0.167 4.167 6 C -0.538 4.538 7 H 0.087 0.913 8 C -0.126 4.126 9 N -0.510 5.510 10 Si 0.723 3.277 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.029 3.971 15 F -0.140 7.140 16 Cl -0.142 7.142 17 H 0.075 0.925 18 H 0.097 0.903 19 H 0.052 0.948 20 H 0.058 0.942 21 H 0.084 0.916 22 H 0.071 0.929 23 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.240 1.266 -3.534 3.953 hybrid contribution -0.518 -0.653 0.199 0.857 sum 0.722 0.613 -3.334 3.466 Atomic orbital electron populations 1.21074 0.92389 0.99894 1.02650 1.23600 0.96573 0.94365 1.00981 0.88391 1.20240 0.94877 0.94137 0.82249 1.21385 0.94407 1.01630 0.99247 1.20404 1.30438 1.01024 1.01971 0.91320 1.24878 0.95598 0.95390 0.96773 1.69999 1.44225 1.20399 1.16399 0.86464 0.79662 0.81897 0.79688 1.19491 1.20750 1.20819 1.25123 0.83615 0.96487 0.91839 1.92772 1.72142 1.66017 1.83083 1.98666 1.38694 1.94050 1.82747 0.92549 0.90287 0.94756 0.94245 0.91583 0.92940 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.20 9.18 37.16 0.34 -1.85 14 2 C -0.14 -3.00 5.97 -90.58 -0.54 -3.54 14 3 H 0.10 2.05 8.14 -51.93 -0.42 1.62 14 4 C 0.09 2.08 1.93 -155.63 -0.30 1.78 14 5 C -0.11 -2.46 9.29 37.16 0.35 -2.11 14 6 C -0.50 -13.12 7.47 -34.44 -0.26 -13.37 14 7 H 0.07 1.86 7.75 -52.49 -0.41 1.45 14 8 C 0.08 2.01 5.14 -17.82 -0.09 1.92 14 9 N -0.87 -22.99 12.74 55.43 0.71 -22.29 14 10 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 14 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 14 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 14 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 14 14 C 0.07 1.62 4.26 -26.73 -0.11 1.51 14 15 F -0.16 -3.76 15.97 2.25 0.04 -3.72 14 16 Cl -0.17 -3.30 27.38 -51.86 -1.42 -4.72 14 17 H 0.06 1.23 7.10 -51.93 -0.37 0.86 14 18 H 0.08 1.82 7.89 -51.93 -0.41 1.41 14 19 H 0.03 0.62 8.14 -51.93 -0.42 0.20 14 20 H 0.04 0.80 6.07 -51.93 -0.32 0.48 14 21 H 0.07 1.53 7.97 -51.93 -0.41 1.11 14 22 H 0.05 1.19 8.04 -51.93 -0.42 0.77 14 23 H 0.26 6.62 8.31 -40.82 -0.34 6.28 14 LS Contribution 219.59 15.07 3.31 3.31 Total: -1.00 -25.97 219.59 -5.32 -31.29 By element: Atomic # 1 Polarization: -1.13 SS G_CDS: -2.31 Total: -3.44 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -0.62 Total: -15.68 kcal Atomic # 7 Polarization: -22.99 SS G_CDS: 0.71 Total: -22.29 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -3.30 SS G_CDS: -1.42 Total: -4.72 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -25.97 -5.32 -31.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669380735.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.350 kcal (2) G-P(sol) polarization free energy of solvation -25.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds