Wall clock time and date at job start Mon Mar 30 2020 01:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08990 * 115.56130 * 2 1 4 4 C 1.53073 * 117.48871 * 145.71178 * 2 1 3 5 5 C 1.53002 * 117.51317 * 214.96187 * 4 2 1 6 6 C 1.50698 * 117.51642 * 0.02562 * 4 2 1 7 7 H 1.08000 * 120.00317 * 97.44100 * 6 4 2 8 8 C 1.37876 * 119.99751 * 277.43552 * 6 4 2 9 9 N 1.31513 * 120.00481 * 3.64900 * 8 6 4 10 10 Si 1.86811 * 120.00097 * 183.65395 * 8 6 4 11 11 H 1.48500 * 109.46764 * 359.97438 * 10 8 6 12 12 H 1.48497 * 109.47336 * 119.99917 * 10 8 6 13 13 H 1.48501 * 109.47049 * 240.00381 * 10 8 6 14 14 C 1.52991 * 59.98690 * 107.48272 * 4 2 1 15 15 F 1.39900 * 117.50001 * 252.49715 * 14 4 2 16 16 Cl 1.80308 * 117.50228 * 107.49507 * 14 4 2 17 17 H 1.08998 * 109.47232 * 154.29559 * 1 2 3 18 18 H 1.08993 * 109.46909 * 274.29741 * 1 2 3 19 19 H 1.09001 * 109.46554 * 34.29981 * 1 2 3 20 20 H 1.09001 * 109.46937 * 295.98025 * 5 4 2 21 21 H 1.08999 * 109.47023 * 55.97367 * 5 4 2 22 22 H 1.08994 * 109.47821 * 175.97729 * 5 4 2 23 23 H 0.96998 * 120.00625 * 179.97438 * 9 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2366 -1.1219 0.7650 5 6 3.5494 -0.7778 1.4715 6 6 1.3724 -2.1422 1.4600 7 1 1.1622 -3.0876 0.9818 8 6 0.8500 -1.8689 2.7063 9 7 1.0460 -0.6912 3.2577 10 14 -0.1362 -3.1716 3.6120 11 1 -0.2122 -4.4008 2.7821 12 1 0.5267 -3.4857 4.9031 13 1 -1.5076 -2.6638 3.8702 14 6 2.2364 -1.1211 -0.7649 15 9 1.4339 -2.0673 -1.4113 16 17 3.7832 -0.7145 -1.5975 17 1 -0.3633 -0.9259 -0.4457 18 1 -0.3633 0.0770 1.0247 19 1 -0.3632 0.8490 -0.5791 20 1 4.2976 -0.4959 0.7307 21 1 3.3859 0.0536 2.1571 22 1 3.8999 -1.6457 2.0299 23 1 0.6781 -0.4987 4.1344 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000669380735.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:10 Heat of formation + Delta-G solvation = -54.722808 kcal Electronic energy + Delta-G solvation = -10572.713315 eV Core-core repulsion = 8361.313579 eV Total energy + Delta-G solvation = -2211.399736 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 192.041 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.62348 -38.76070 -36.69479 -34.10531 -30.73952 -27.49793 -27.28804 -21.76585 -21.19246 -17.98524 -17.43232 -16.99602 -16.19579 -15.66321 -14.55276 -14.29315 -13.83507 -13.60661 -13.27131 -12.92390 -12.78763 -12.73894 -12.55897 -12.36659 -12.16527 -11.78201 -11.32199 -10.70538 -10.27287 -10.05246 -8.16495 -6.26984 0.74092 1.41735 1.46544 1.56133 2.40776 2.77856 3.14410 3.46153 4.00300 4.14951 4.56011 4.82335 4.88758 5.03557 5.10345 5.20475 5.32850 5.60362 5.66680 5.80214 6.22322 6.73399 7.39903 8.91850 Molecular weight = 192.04amu Principal moments of inertia in cm(-1) A = 0.052112 B = 0.014409 C = 0.013836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.170983 B = 1942.702615 C = 2023.229526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.130 4.130 3 H 0.114 0.886 4 C 0.057 3.943 5 C -0.098 4.098 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.045 3.955 9 N -0.892 5.892 10 Si 0.948 3.052 11 H -0.275 1.275 12 H -0.277 1.277 13 H -0.278 1.278 14 C 0.071 3.929 15 F -0.169 7.169 16 Cl -0.139 7.139 17 H 0.044 0.956 18 H 0.058 0.942 19 H 0.066 0.934 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.257 1.507 -3.922 4.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.150 4.150 3 H 0.132 0.868 4 C 0.056 3.944 5 C -0.155 4.155 6 C -0.554 4.554 7 H 0.068 0.932 8 C -0.157 4.157 9 N -0.528 5.528 10 Si 0.774 3.226 11 H -0.199 1.199 12 H -0.203 1.203 13 H -0.203 1.203 14 C 0.028 3.972 15 F -0.149 7.149 16 Cl -0.113 7.113 17 H 0.063 0.937 18 H 0.077 0.923 19 H 0.085 0.915 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.317 1.615 -3.848 4.376 hybrid contribution -0.488 -0.754 0.247 0.931 sum 0.829 0.861 -3.600 3.794 Atomic orbital electron populations 1.21011 0.91931 1.00730 1.01802 1.23661 0.97066 0.94538 0.99763 0.86844 1.20318 0.95599 0.95133 0.83363 1.21258 0.94314 1.00692 0.99282 1.20469 1.31348 1.00979 1.02633 0.93175 1.25402 0.96254 0.96863 0.97207 1.70053 1.44766 1.21351 1.16643 0.85664 0.78658 0.79741 0.78580 1.19922 1.20291 1.20350 1.24987 0.84501 0.96277 0.91389 1.92753 1.72615 1.66438 1.83131 1.98666 1.36743 1.93797 1.82082 0.93678 0.92293 0.91545 0.92308 0.92577 0.94017 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.03 9.18 71.98 0.66 -3.37 14 2 C -0.13 -5.58 5.97 -10.77 -0.06 -5.65 14 3 H 0.11 4.47 8.14 -2.39 -0.02 4.45 14 4 C 0.06 2.71 1.93 -52.91 -0.10 2.61 14 5 C -0.10 -4.32 9.29 71.98 0.67 -3.65 14 6 C -0.52 -27.04 7.47 25.60 0.19 -26.85 14 7 H 0.05 2.74 7.75 -2.91 -0.02 2.72 14 8 C 0.05 2.32 5.14 84.65 0.44 2.76 14 9 N -0.89 -46.46 12.74 21.45 0.27 -46.19 14 10 Si 0.95 41.33 29.54 68.60 2.03 43.36 14 11 H -0.27 -12.04 7.11 99.48 0.71 -11.34 14 12 H -0.28 -11.84 7.11 99.48 0.71 -11.13 14 13 H -0.28 -11.86 7.11 99.48 0.71 -11.15 14 14 C 0.07 3.10 4.26 30.59 0.13 3.23 14 15 F -0.17 -7.79 15.97 44.97 0.72 -7.07 14 16 Cl -0.14 -5.16 27.38 -2.72 -0.07 -5.23 14 17 H 0.04 1.93 7.10 -2.39 -0.02 1.91 14 18 H 0.06 2.67 7.89 -2.39 -0.02 2.65 14 19 H 0.07 2.27 8.14 -2.39 -0.02 2.25 14 20 H 0.06 2.29 6.07 -2.39 -0.01 2.27 14 21 H 0.06 2.55 7.97 -2.39 -0.02 2.53 14 22 H 0.04 1.87 8.04 -2.39 -0.02 1.85 14 23 H 0.27 13.18 8.31 -92.71 -0.77 12.41 14 Total: -1.00 -52.70 219.59 6.06 -46.64 By element: Atomic # 1 Polarization: -1.79 SS G_CDS: 1.20 Total: -0.59 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: 1.92 Total: -30.91 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.27 Total: -46.19 kcal Atomic # 9 Polarization: -7.79 SS G_CDS: 0.72 Total: -7.07 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 17 Polarization: -5.16 SS G_CDS: -0.07 Total: -5.23 kcal Total: -52.70 6.06 -46.64 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000669380735.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.087 kcal (2) G-P(sol) polarization free energy of solvation -52.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds