Wall clock time and date at job start Mon Mar 30 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09009 * 110.54802 * 305.69820 * 10 9 7 12 12 C 1.54989 * 110.62128 * 182.82144 * 10 9 7 13 13 C 1.54978 * 102.01482 * 204.59297 * 12 10 9 14 14 F 1.39902 * 110.34466 * 262.02410 * 13 12 10 15 15 F 1.39902 * 110.57544 * 139.42105 * 13 12 10 16 16 C 1.54103 * 104.25294 * 20.66634 * 13 12 10 17 17 O 1.43742 * 107.29089 * 2.16296 * 16 13 12 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.09006 * 110.90545 * 322.67391 * 12 10 9 22 22 H 1.09005 * 110.90985 * 86.27452 * 12 10 9 23 23 H 1.09000 * 109.87878 * 242.74478 * 16 13 12 24 24 H 1.08997 * 109.87707 * 121.58862 * 16 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9465 -3.5623 -0.8389 12 6 1.4985 -5.0182 -0.0880 13 6 2.5262 -5.9890 0.5469 14 9 3.2510 -6.6503 -0.4503 15 9 1.8824 -6.9112 1.3790 16 6 3.4532 -5.0745 1.3710 17 8 2.9505 -3.7335 1.2472 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 0.5790 -4.9899 0.4968 22 1 1.2913 -5.2896 -1.1231 23 1 4.4691 -5.1270 0.9795 24 1 3.4407 -5.3800 2.4172 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885269208.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:02 Heat of formation + Delta-G solvation = -157.508700 kcal Electronic energy + Delta-G solvation = -12173.952485 eV Core-core repulsion = 9529.759243 eV Total energy + Delta-G solvation = -2644.193242 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.070 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.79220 -46.93631 -38.58741 -33.26387 -31.29528 -29.91037 -26.75646 -23.50371 -21.56111 -20.55986 -17.64417 -16.75805 -16.52630 -15.83480 -14.97381 -14.63370 -14.44171 -14.25040 -13.62399 -13.27343 -12.64242 -12.10057 -11.93071 -11.53576 -11.38679 -11.19601 -10.83233 -10.59440 -10.33734 -9.65051 -9.26304 -9.05903 -8.40573 -6.03584 -4.05121 3.34186 3.38032 3.41395 3.74081 3.94855 4.22889 4.44684 4.57295 4.88026 5.30083 5.34154 5.44713 5.66041 5.86947 5.87143 6.31525 6.53035 7.09395 7.49743 7.70038 7.93090 8.32495 8.98539 9.58259 11.07923 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.079128 B = 0.009026 C = 0.008691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 353.771118 B = 3101.543606 C = 3221.024348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.086 3.914 11 H 0.070 0.930 12 C -0.190 4.190 13 C 0.247 3.753 14 F -0.196 7.196 15 F -0.195 7.195 16 C 0.013 3.987 17 O -0.341 6.341 18 H 0.262 0.738 19 H 0.030 0.970 20 H 0.037 0.963 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.080 0.920 24 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.249 -9.711 0.416 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.554 4.554 8 H 0.077 0.923 9 C -0.010 4.010 10 C 0.029 3.971 11 H 0.088 0.912 12 C -0.228 4.228 13 C 0.210 3.790 14 F -0.177 7.177 15 F -0.176 7.176 16 C -0.066 4.066 17 O -0.259 6.259 18 H 0.072 0.928 19 H 0.048 0.952 20 H 0.055 0.945 21 H 0.125 0.875 22 H 0.119 0.881 23 H 0.098 0.902 24 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.119 -9.452 0.560 10.326 hybrid contribution 0.429 0.434 -0.159 0.630 sum 4.548 -9.019 0.401 10.109 Atomic orbital electron populations 1.69942 1.06052 1.26897 1.50759 1.24997 0.94875 0.99341 0.95230 0.86588 0.79516 0.82816 0.78683 1.20244 1.21314 1.20150 1.21073 0.93194 0.90420 1.50664 0.92315 1.19212 0.92910 0.90307 0.98525 1.23567 0.93848 0.94184 0.85476 0.91184 1.24322 0.99255 0.95715 1.03469 1.22732 0.90277 0.84131 0.81812 1.92999 1.78955 1.83329 1.62414 1.92996 1.82612 1.69664 1.72369 1.24020 0.96827 0.84557 1.01200 1.89171 1.72660 1.24102 1.39988 0.92848 0.95171 0.94535 0.87520 0.88092 0.90167 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 13.29 55.43 0.74 -25.79 14 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 14 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 14 4 H -0.28 -6.54 7.11 56.52 0.40 -6.13 14 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 14 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 14 7 C -0.52 -14.44 8.99 -34.44 -0.31 -14.75 14 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 14 9 C 0.03 0.68 4.74 -27.88 -0.13 0.55 14 10 C 0.09 1.75 3.24 -25.68 -0.08 1.67 14 11 H 0.07 1.39 8.14 -51.92 -0.42 0.97 14 12 C -0.19 -3.16 6.21 -24.64 -0.15 -3.31 14 13 C 0.25 3.89 2.68 -25.11 -0.07 3.83 14 14 F -0.20 -3.07 17.10 2.25 0.04 -3.03 14 15 F -0.20 -3.10 17.11 2.25 0.04 -3.06 14 16 C 0.01 0.20 7.42 37.73 0.28 0.48 14 17 O -0.34 -7.01 11.10 -35.23 -0.39 -7.40 14 18 H 0.26 7.34 8.31 -40.82 -0.34 7.00 14 19 H 0.03 0.81 8.14 -51.93 -0.42 0.39 14 20 H 0.04 0.93 8.14 -51.93 -0.42 0.51 14 21 H 0.11 1.76 8.04 -51.93 -0.42 1.35 14 22 H 0.10 1.50 8.12 -51.93 -0.42 1.07 14 23 H 0.08 1.12 8.03 -51.93 -0.42 0.70 14 24 H 0.10 1.42 8.03 -51.93 -0.42 1.00 14 LS Contribution 220.90 15.07 3.33 3.33 Total: -1.00 -29.64 220.90 -4.31 -33.96 By element: Atomic # 1 Polarization: -2.11 SS G_CDS: -2.48 Total: -4.59 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -0.56 Total: -10.02 kcal Atomic # 7 Polarization: -26.53 SS G_CDS: 0.74 Total: -25.79 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: -0.39 Total: -7.40 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.08 Total: -6.09 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -29.64 -4.31 -33.96 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885269208.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.553 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds