Wall clock time and date at job start Mon Mar 30 2020 02:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.32979 * 119.99982 * 2 1 4 4 C 1.47075 * 120.00209 * 6.59469 * 3 2 1 5 5 C 1.36225 * 125.95741 * 185.94279 * 4 3 2 6 6 C 1.40827 * 106.72627 * 180.02562 * 5 4 3 7 7 C 1.34796 * 107.06071 * 0.02562 * 6 5 4 8 8 O 1.34299 * 108.71965 * 359.73319 * 7 6 5 9 9 C 1.50697 * 119.99768 * 179.97438 * 2 1 3 10 10 C 1.50701 * 109.47207 * 275.00065 * 9 2 1 11 11 H 1.08006 * 119.99970 * 359.97438 * 10 9 2 12 12 C 1.37882 * 120.00176 * 180.02562 * 10 9 2 13 13 N 1.31518 * 119.99830 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99984 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47062 * 89.99932 * 14 12 10 16 16 H 1.48501 * 109.47325 * 209.99878 * 14 12 10 17 17 H 1.48497 * 109.47568 * 330.00115 * 14 12 10 18 18 H 1.09001 * 109.46927 * 275.42521 * 1 2 3 19 19 H 1.08996 * 109.46713 * 35.42577 * 1 2 3 20 20 H 1.09001 * 109.47311 * 155.42853 * 1 2 3 21 21 H 1.08000 * 119.99645 * 186.60051 * 3 2 1 22 22 H 1.08010 * 126.63727 * 359.97438 * 5 4 3 23 23 H 1.07999 * 126.46975 * 180.02562 * 6 5 4 24 24 H 1.08004 * 125.63772 * 180.02562 * 7 6 5 25 25 H 1.09003 * 109.47682 * 34.99860 * 9 2 1 26 26 H 1.09001 * 109.47264 * 155.00461 * 9 2 1 27 27 H 0.96997 * 119.99739 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1516 0.0000 4 6 1.4439 2.4212 0.1463 5 6 1.9833 3.6683 0.0494 6 6 0.9318 4.5819 0.2565 7 6 -0.1854 3.8577 0.4678 8 8 0.1263 2.5534 0.3951 9 6 2.2605 -1.3051 0.0006 10 6 2.4044 -1.8015 1.4162 11 1 1.9919 -1.2288 2.2338 12 6 3.0636 -2.9861 1.6678 13 7 3.5672 -3.6826 0.6724 14 14 3.2426 -3.6009 3.4226 15 1 2.0822 -4.4616 3.7663 16 1 4.4961 -4.3874 3.5461 17 1 3.2915 -2.4426 4.3505 18 1 -0.3633 0.0972 1.0231 19 1 -0.3632 0.8374 -0.5957 20 1 -0.3634 -0.9346 -0.4273 21 1 3.2466 1.1547 -0.1075 22 1 3.0175 3.9098 -0.1472 23 1 1.0063 5.6593 0.2476 24 1 -1.1693 4.2600 0.6588 25 1 1.7131 -2.0410 -0.5885 26 1 3.2488 -1.1543 -0.4337 27 1 4.0306 -4.5161 0.8493 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535819533.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:36 Heat of formation + Delta-G solvation = -4.860004 kcal Electronic energy + Delta-G solvation = -11287.315528 eV Core-core repulsion = 9203.971160 eV Total energy + Delta-G solvation = -2083.344368 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.30134 -37.37651 -34.68227 -33.87390 -31.18292 -29.27182 -27.47130 -25.16149 -22.49846 -21.80859 -19.68914 -18.51659 -17.54275 -16.91599 -16.59914 -15.73973 -15.10545 -14.61647 -14.03746 -13.80349 -13.74272 -13.38382 -13.19201 -12.96039 -12.61890 -12.38662 -12.26049 -11.67667 -11.39916 -10.98979 -10.61067 -10.45529 -8.64525 -8.18768 -6.34999 0.34672 1.39747 1.40981 1.51331 1.54954 2.14896 2.25174 2.42150 3.09461 3.93769 4.16185 4.24540 4.30815 4.44203 4.81019 4.86687 4.96366 5.06788 5.10581 5.22446 5.30156 5.35621 5.63370 5.72134 5.79856 6.03851 6.15695 6.37908 6.77351 7.33572 8.87885 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.061462 B = 0.008035 C = 0.007891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 455.456287 B = 3483.937449 C = 3547.526536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.067 4.067 3 C -0.152 4.152 4 C 0.019 3.981 5 C -0.225 4.225 6 C -0.217 4.217 7 C -0.059 4.059 8 O -0.184 6.184 9 C 0.052 3.948 10 C -0.530 4.530 11 H 0.055 0.945 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.967 3.033 15 H -0.270 1.270 16 H -0.279 1.279 17 H -0.267 1.267 18 H 0.067 0.933 19 H 0.077 0.923 20 H 0.060 0.940 21 H 0.134 0.866 22 H 0.156 0.844 23 H 0.174 0.826 24 H 0.238 0.762 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.172 13.098 0.083 14.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.068 4.068 3 C -0.170 4.170 4 C -0.030 4.030 5 C -0.244 4.244 6 C -0.236 4.236 7 C -0.125 4.125 8 O -0.081 6.081 9 C 0.015 3.985 10 C -0.568 4.568 11 H 0.073 0.927 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.791 3.209 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.191 1.191 18 H 0.086 0.914 19 H 0.096 0.904 20 H 0.079 0.921 21 H 0.152 0.848 22 H 0.174 0.826 23 H 0.191 0.809 24 H 0.254 0.746 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.274 12.706 0.071 14.171 hybrid contribution 0.558 -0.491 0.599 0.955 sum -5.716 12.215 0.670 13.503 Atomic orbital electron populations 1.20861 0.91184 1.01943 1.02178 1.22837 0.96851 0.95367 0.91695 1.20662 0.98168 0.87644 1.10483 1.20980 0.81319 0.95578 1.05157 1.22089 1.01732 0.91242 1.09332 1.22045 0.92198 1.01692 1.07679 1.24953 1.02228 0.79591 1.05768 1.84286 1.25192 1.28856 1.69737 1.18193 0.93932 0.89868 0.96486 1.21331 1.36181 1.06551 0.92722 0.92711 1.25918 0.94845 0.96715 1.01805 1.70076 1.37944 1.15651 1.33234 0.85420 0.77891 0.78426 0.79171 1.19560 1.20425 1.19124 0.91446 0.90411 0.92081 0.84794 0.82644 0.80861 0.74552 0.97458 0.97563 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.04 8.59 71.24 0.61 -3.43 15 2 C -0.07 -3.00 5.30 -17.62 -0.09 -3.10 15 3 C -0.15 -6.19 9.69 23.42 0.23 -5.96 15 4 C 0.02 0.68 6.71 24.12 0.16 0.84 15 5 C -0.22 -6.79 10.85 22.43 0.24 -6.54 15 6 C -0.22 -5.28 10.88 22.11 0.24 -5.03 15 7 C -0.06 -1.41 12.08 67.03 0.81 -0.60 15 8 O -0.18 -5.99 7.51 -6.83 -0.05 -6.04 15 9 C 0.05 2.80 5.14 29.10 0.15 2.95 15 10 C -0.53 -30.45 9.09 25.60 0.23 -30.22 15 11 H 0.05 3.10 7.74 -2.91 -0.02 3.08 15 12 C 0.01 0.31 5.46 84.66 0.46 0.78 15 13 N -0.93 -56.00 13.29 21.45 0.28 -55.72 15 14 Si 0.97 44.37 29.54 68.60 2.03 46.40 15 15 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 17 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 18 H 0.07 2.55 8.12 -2.39 -0.02 2.53 15 19 H 0.08 2.69 6.10 -2.39 -0.01 2.67 15 20 H 0.06 2.29 8.03 -2.39 -0.02 2.27 15 21 H 0.13 5.37 7.99 -2.91 -0.02 5.35 15 22 H 0.16 4.15 8.06 -2.91 -0.02 4.12 15 23 H 0.17 2.98 8.06 -2.91 -0.02 2.96 15 24 H 0.24 3.28 8.06 -2.91 -0.02 3.26 15 25 H 0.01 0.41 8.07 -2.39 -0.02 0.39 15 26 H 0.01 0.35 7.99 -2.39 -0.02 0.33 15 27 H 0.27 15.01 8.31 -92.71 -0.77 14.24 15 Total: -1.00 -65.05 241.98 6.45 -58.60 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: 1.14 Total: 7.07 kcal Atomic # 6 Polarization: -53.36 SS G_CDS: 3.05 Total: -50.31 kcal Atomic # 7 Polarization: -56.00 SS G_CDS: 0.28 Total: -55.72 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.05 Total: -6.04 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -65.05 6.45 -58.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535819533.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.737 kcal (2) G-P(sol) polarization free energy of solvation -65.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds