Wall clock time and date at job start Mon Mar 30 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 11 11 O 1.42906 * 109.46805 * 60.00720 * 9 7 2 12 12 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 13 13 C 1.53781 * 113.61476 * 277.50159 * 12 9 7 14 14 C 1.53779 * 87.07812 * 220.01608 * 13 12 9 15 15 F 1.39900 * 113.61779 * 270.87964 * 14 13 12 16 16 F 1.39905 * 113.68685 * 139.99373 * 14 13 12 17 17 C 1.53776 * 113.61550 * 180.02562 * 12 9 7 18 18 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 19 19 H 0.96696 * 113.99911 * 59.99931 * 11 9 7 20 20 H 1.08997 * 112.84405 * 48.80392 * 12 9 7 21 21 H 1.08993 * 113.61731 * 334.56827 * 13 12 9 22 22 H 1.08999 * 113.61144 * 105.46995 * 13 12 9 23 23 H 1.09003 * 113.61248 * 254.53555 * 17 12 9 24 24 H 1.09003 * 113.61486 * 25.42978 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8896 11 8 0.4292 -2.5746 -1.1672 12 6 2.2454 -3.6621 -0.0005 13 6 2.7855 -4.0107 -1.3975 14 6 2.6675 -5.4883 -0.9881 15 9 3.8152 -5.9909 -0.3658 16 9 2.1960 -6.3189 -2.0104 17 6 1.5748 -5.0459 -0.0012 18 1 -0.4851 0.8400 0.0004 19 1 0.9211 -2.5291 -1.9984 20 1 3.0232 -3.5537 0.7553 21 1 2.1146 -3.7273 -2.2083 22 1 3.8123 -3.6841 -1.5626 23 1 1.6238 -5.5552 0.9613 24 1 0.5729 -5.0454 -0.4304 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536097297.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:56 Heat of formation + Delta-G solvation = -137.246157 kcal Electronic energy + Delta-G solvation = -12331.181580 eV Core-core repulsion = 9687.866988 eV Total energy + Delta-G solvation = -2643.314592 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.070 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -48.42381 -46.76105 -38.13286 -34.32287 -32.16937 -27.83314 -25.79919 -24.26090 -21.44137 -19.03746 -17.22729 -16.93866 -16.15261 -15.69751 -14.72743 -14.63057 -14.16355 -13.63920 -13.10387 -13.03671 -12.88335 -12.15698 -11.63026 -11.19130 -10.96122 -10.83832 -10.59447 -10.51775 -10.06056 -9.92096 -9.07940 -8.60826 -8.24047 -6.05522 -4.24045 3.26454 3.32219 3.33836 3.93747 4.27587 4.35586 4.79920 4.90809 5.14781 5.23228 5.87683 5.98004 6.03411 6.13470 6.19920 6.24738 6.58608 6.90890 7.61554 7.78607 8.11438 8.78145 9.27727 9.52405 10.98681 Molecular weight = 192.07amu Principal moments of inertia in cm(-1) A = 0.069685 B = 0.010373 C = 0.009751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 401.714292 B = 2698.608230 C = 2870.728169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.079 3.921 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.572 4.572 8 H 0.057 0.943 9 C 0.240 3.760 10 H 0.064 0.936 11 O -0.563 6.563 12 C -0.124 4.124 13 C -0.152 4.152 14 C 0.243 3.757 15 F -0.189 7.189 16 F -0.201 7.201 17 C -0.160 4.160 18 H 0.262 0.738 19 H 0.344 0.656 20 H 0.094 0.906 21 H 0.111 0.889 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -6.893 -1.456 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.610 4.610 8 H 0.075 0.925 9 C 0.182 3.818 10 H 0.081 0.919 11 O -0.367 6.367 12 C -0.142 4.142 13 C -0.190 4.190 14 C 0.207 3.793 15 F -0.170 7.170 16 F -0.182 7.182 17 C -0.198 4.198 18 H 0.071 0.929 19 H 0.189 0.811 20 H 0.113 0.887 21 H 0.129 0.871 22 H 0.102 0.898 23 H 0.098 0.902 24 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.432 -6.870 -1.006 7.746 hybrid contribution 1.153 0.775 -0.389 1.442 sum 4.585 -6.096 -1.395 7.754 Atomic orbital electron populations 1.70052 1.05950 1.26674 1.46869 1.25046 0.94699 0.99180 0.93775 0.86723 0.79711 0.83132 0.78726 1.20140 1.21211 1.20142 1.21586 0.93197 0.91308 1.54899 0.92517 1.19213 0.87413 0.88982 0.86185 0.91855 1.86598 1.38513 1.96155 1.15456 1.23286 0.99985 0.95560 0.95419 1.24002 1.03947 0.89719 1.01322 1.22512 0.83977 0.87334 0.85516 1.92957 1.51988 1.89322 1.82744 1.92960 1.88156 1.75723 1.61340 1.24159 0.98949 0.97980 0.98679 0.92850 0.81068 0.88736 0.87109 0.89805 0.90167 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.76 12.84 55.43 0.71 -24.05 14 2 C 0.08 2.15 5.40 -17.82 -0.10 2.06 14 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 14 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 14 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 14 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 14 7 C -0.57 -15.03 8.75 -34.44 -0.30 -15.33 14 8 H 0.06 1.45 7.74 -52.48 -0.41 1.04 14 9 C 0.24 5.72 2.88 -27.88 -0.08 5.64 14 10 H 0.06 1.66 8.14 -51.93 -0.42 1.24 14 11 O -0.56 -13.61 12.00 -35.23 -0.42 -14.03 14 12 C -0.12 -2.36 3.50 -89.81 -0.31 -2.68 14 13 C -0.15 -2.60 7.19 -25.92 -0.19 -2.79 14 14 C 0.24 4.08 3.27 -25.94 -0.08 4.00 14 15 F -0.19 -3.25 17.38 2.25 0.04 -3.21 14 16 F -0.20 -3.46 17.41 2.25 0.04 -3.42 14 17 C -0.16 -2.69 7.32 -25.94 -0.19 -2.88 14 18 H 0.26 7.18 8.31 -40.82 -0.34 6.84 14 19 H 0.34 7.37 6.81 45.56 0.31 7.68 14 20 H 0.09 1.79 8.14 -51.93 -0.42 1.37 14 21 H 0.11 1.84 5.90 -51.93 -0.31 1.53 14 22 H 0.08 1.36 8.14 -51.93 -0.42 0.93 14 23 H 0.08 1.22 8.14 -51.93 -0.42 0.80 14 24 H 0.11 1.96 7.77 -51.93 -0.40 1.55 14 LS Contribution 217.91 15.07 3.28 3.28 Total: -1.00 -28.62 217.91 -4.25 -32.87 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -1.63 Total: 4.89 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: -1.25 Total: -11.99 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.71 Total: -24.05 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.42 Total: -14.03 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.08 Total: -6.63 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 3.28 Total: 3.28 kcal Total: -28.62 -4.25 -32.87 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536097297.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.372 kcal (2) G-P(sol) polarization free energy of solvation -28.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds