Wall clock time and date at job start Mon Mar 30 2020 02:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32993 * 119.99655 * 2 1 4 4 C 1.47070 * 119.99919 * 173.08675 * 3 2 1 5 5 C 1.36226 * 125.95734 * 173.87436 * 4 3 2 6 6 C 1.40836 * 106.72344 * 180.02562 * 5 4 3 7 7 C 1.34792 * 107.06616 * 0.02562 * 6 5 4 8 8 O 1.34304 * 108.71782 * 0.02562 * 7 6 5 9 9 C 1.50691 * 120.00350 * 179.97438 * 2 1 3 10 10 C 1.50706 * 109.47366 * 272.62488 * 9 2 1 11 11 H 1.07998 * 119.99754 * 0.02562 * 10 9 2 12 12 C 1.37873 * 120.00226 * 179.97438 * 10 9 2 13 13 N 1.31522 * 119.99798 * 0.02562 * 12 10 9 14 14 Si 1.86793 * 120.00226 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47523 * 120.00037 * 14 12 10 17 17 H 1.48498 * 109.47296 * 240.00230 * 14 12 10 18 18 H 1.08994 * 109.47095 * 90.00245 * 1 2 3 19 19 H 1.09004 * 109.46799 * 210.00497 * 1 2 3 20 20 H 1.08997 * 109.47183 * 330.00227 * 1 2 3 21 21 H 1.07998 * 119.99996 * 353.08247 * 3 2 1 22 22 H 1.08001 * 126.63706 * 359.96459 * 5 4 3 23 23 H 1.07996 * 126.46399 * 179.97438 * 6 5 4 24 24 H 1.07997 * 125.63779 * 180.02562 * 7 6 5 25 25 H 1.08998 * 109.47040 * 32.62815 * 9 2 1 26 26 H 1.08999 * 109.47280 * 152.62441 * 9 2 1 27 27 H 0.96996 * 119.99403 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6346 1.1565 0.1533 5 6 4.4458 2.2464 0.0539 6 6 5.7617 1.7930 0.2688 7 6 5.6920 0.4645 0.4859 8 8 4.4062 0.0831 0.4146 9 6 2.2605 -1.3050 0.0006 10 6 2.4554 -1.7720 1.4202 11 1 2.0716 -1.1829 2.2399 12 6 3.1228 -2.9518 1.6723 13 7 3.5898 -3.6694 0.6740 14 14 3.3637 -3.5309 3.4318 15 1 2.7487 -2.5520 4.3637 16 1 2.7176 -4.8562 3.6096 17 1 4.8158 -3.6454 3.7208 18 1 -0.3633 0.0000 -1.0276 19 1 -0.3633 -0.8900 0.5139 20 1 -0.3633 0.8900 0.5138 21 1 1.6377 2.0837 -0.1126 22 1 4.1392 3.2614 -0.1511 23 1 6.6577 2.3959 0.2604 24 1 6.5312 -0.1856 0.6844 25 1 1.6927 -2.0526 -0.5532 26 1 3.2325 -1.1635 -0.4720 27 1 4.0596 -4.4992 0.8515 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615637174.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:37 Heat of formation + Delta-G solvation = 18.784150 kcal Electronic energy + Delta-G solvation = -11729.382578 eV Core-core repulsion = 9647.063498 eV Total energy + Delta-G solvation = -2082.319080 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.089 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.56885 -35.60914 -32.51807 -32.05520 -29.46113 -27.61000 -25.58742 -23.06145 -20.78197 -20.23435 -17.96366 -16.35860 -15.84721 -14.98805 -14.54639 -13.86414 -13.59778 -12.85486 -12.40368 -12.13477 -12.01923 -11.81087 -11.25921 -11.14812 -10.91652 -10.52192 -10.15622 -9.70336 -9.36994 -9.21481 -8.77120 -8.31253 -6.94955 -5.95467 -3.96940 2.05549 3.08881 3.32039 3.39630 3.44618 3.81309 3.97456 4.50278 5.38733 5.45339 5.68816 5.73636 5.87889 6.00539 6.14917 6.23935 6.43276 6.54558 6.63125 6.90543 7.09770 7.29517 7.41771 7.70503 7.87948 8.00136 8.18103 8.39400 9.05667 9.64322 11.14540 Molecular weight = 192.09amu Principal moments of inertia in cm(-1) A = 0.030292 B = 0.015347 C = 0.011481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.128919 B = 1823.983085 C = 2438.217845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.043 4.043 3 C -0.171 4.171 4 C 0.062 3.938 5 C -0.245 4.245 6 C -0.227 4.227 7 C -0.057 4.057 8 O -0.114 6.114 9 C 0.035 3.965 10 C -0.493 4.493 11 H 0.053 0.947 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.889 3.111 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.284 1.284 18 H 0.063 0.937 19 H 0.073 0.927 20 H 0.055 0.945 21 H 0.124 0.876 22 H 0.135 0.865 23 H 0.135 0.865 24 H 0.189 0.811 25 H 0.025 0.975 26 H 0.047 0.953 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.233 7.865 -1.071 7.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.044 4.044 3 C -0.189 4.189 4 C 0.010 3.990 5 C -0.265 4.265 6 C -0.246 4.246 7 C -0.126 4.126 8 O -0.007 6.007 9 C -0.001 4.001 10 C -0.531 4.531 11 H 0.072 0.928 12 C -0.141 4.141 13 N -0.533 5.533 14 Si 0.717 3.283 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.211 1.211 18 H 0.082 0.918 19 H 0.092 0.908 20 H 0.074 0.926 21 H 0.142 0.858 22 H 0.153 0.847 23 H 0.153 0.847 24 H 0.206 0.794 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.256 7.401 -1.064 7.481 hybrid contribution 0.475 -0.131 0.981 1.098 sum 0.219 7.270 -0.083 7.273 Atomic orbital electron populations 1.20858 0.92837 1.02415 1.01325 1.23110 0.95420 0.97258 0.88566 1.20427 0.87366 0.97789 1.13335 1.20863 0.92040 0.84572 1.01489 1.21562 0.92744 0.98937 1.13207 1.21508 0.97856 0.95140 1.10080 1.24081 0.86263 0.95738 1.06534 1.84822 1.15826 1.33542 1.66502 1.18654 0.95249 0.88133 0.98057 1.20896 1.35447 1.05600 0.91158 0.92849 1.24923 0.95704 0.96706 0.96734 1.69972 1.38307 1.14677 1.30384 0.86578 0.77850 0.78528 0.85337 1.19821 1.21091 1.21059 0.91817 0.90773 0.92614 0.85795 0.84680 0.84731 0.79450 0.95713 0.93543 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.02 10.04 36.01 0.36 -1.66 15 2 C -0.04 -0.93 5.30 -101.17 -0.54 -1.46 15 3 C -0.17 -3.43 9.69 -37.82 -0.37 -3.80 15 4 C 0.06 1.34 6.70 -36.73 -0.25 1.09 15 5 C -0.25 -4.62 10.86 -39.32 -0.43 -5.04 15 6 C -0.23 -4.06 10.88 -39.82 -0.43 -4.49 15 7 C -0.06 -1.13 12.08 29.51 0.36 -0.77 15 8 O -0.11 -2.72 6.66 4.46 0.03 -2.69 15 9 C 0.04 0.92 4.39 -29.04 -0.13 0.79 15 10 C -0.49 -13.86 8.18 -34.44 -0.28 -14.14 15 11 H 0.05 1.51 7.74 -52.49 -0.41 1.11 15 12 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 13 N -0.89 -26.57 13.29 55.43 0.74 -25.83 15 14 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 15 15 H -0.27 -6.66 7.11 56.52 0.40 -6.26 15 16 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 18 H 0.06 0.96 8.14 -51.93 -0.42 0.53 15 19 H 0.07 1.33 8.12 -51.93 -0.42 0.91 15 20 H 0.05 0.83 8.07 -51.93 -0.42 0.41 15 21 H 0.12 2.05 8.06 -52.49 -0.42 1.63 15 22 H 0.14 2.15 8.06 -52.49 -0.42 1.73 15 23 H 0.13 1.96 8.06 -52.49 -0.42 1.54 15 24 H 0.19 3.14 8.06 -52.49 -0.42 2.72 15 25 H 0.02 0.68 8.13 -51.93 -0.42 0.25 15 26 H 0.05 1.31 5.50 -51.93 -0.29 1.03 15 27 H 0.26 7.27 8.31 -40.82 -0.34 6.94 15 LS Contribution 240.62 15.07 3.63 3.63 Total: -1.00 -30.79 240.62 -5.63 -36.42 By element: Atomic # 1 Polarization: 2.69 SS G_CDS: -3.20 Total: -0.51 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: -1.80 Total: -27.87 kcal Atomic # 7 Polarization: -26.57 SS G_CDS: 0.74 Total: -25.83 kcal Atomic # 8 Polarization: -2.72 SS G_CDS: 0.03 Total: -2.69 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.79 -5.63 -36.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615637174.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.201 kcal (2) G-P(sol) polarization free energy of solvation -30.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds