Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 N 1.46507 * 109.46602 * 240.00073 * 2 1 3 5 5 C 1.36935 * 119.99742 * 85.00573 * 4 2 1 6 6 H 1.07999 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99464 * 0.27719 * 7 5 4 9 9 Si 1.86800 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00276 * 9 7 5 12 12 H 1.48497 * 109.46870 * 240.00086 * 9 7 5 13 13 C 1.50697 * 109.47089 * 120.00476 * 2 1 3 14 14 C 1.38654 * 120.79061 * 79.71467 * 13 2 1 15 15 C 1.38204 * 119.16195 * 179.75543 * 14 13 2 16 16 N 1.31868 * 120.76191 * 0.53277 * 15 14 13 17 17 C 1.31866 * 121.72949 * 359.74263 * 16 15 14 18 18 C 1.38206 * 120.76327 * 359.97438 * 17 16 15 19 19 H 1.09005 * 109.47291 * 59.99545 * 1 2 3 20 20 H 1.09000 * 109.47695 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47240 * 299.99841 * 1 2 3 22 22 H 0.96999 * 120.00180 * 264.99500 * 4 2 1 23 23 H 0.97001 * 120.00638 * 359.71685 * 8 7 5 24 24 H 1.08001 * 120.42087 * 0.02562 * 14 13 2 25 25 H 1.07999 * 119.61595 * 180.25165 * 15 14 13 26 26 H 1.08003 * 119.62365 * 179.97438 * 17 16 15 27 27 H 1.08005 * 120.42093 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6121 -0.6617 -3.5092 8 7 2.9203 -1.9399 -3.4513 9 14 2.7899 0.2702 -5.1183 10 1 2.3752 1.6824 -4.9211 11 1 4.2069 0.2281 -5.5608 12 1 1.9295 -0.3590 -6.1523 13 6 2.0323 -0.7105 1.2304 14 6 2.0684 -2.0955 1.2852 15 6 2.5402 -2.7121 2.4285 16 7 2.9429 -1.9992 3.4622 17 6 2.9175 -0.6808 3.4475 18 6 2.4639 0.0051 2.3367 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 2.2489 -1.6318 -1.1528 23 1 2.8277 -2.4239 -2.6158 24 1 1.7361 -2.6849 0.4435 25 1 2.5754 -3.7904 2.4776 26 1 3.2551 -0.1307 4.3134 27 1 2.4459 1.0850 2.3305 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035693455.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = 40.339309 kcal Electronic energy + Delta-G solvation = -11493.337270 eV Core-core repulsion = 9444.245643 eV Total energy + Delta-G solvation = -2049.091627 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.90426 -36.06569 -32.96384 -30.95922 -30.43875 -28.11205 -24.29512 -23.48711 -22.75502 -20.31729 -17.59155 -16.56646 -15.83252 -15.28483 -14.47203 -13.89271 -13.72231 -13.54720 -13.21185 -12.66606 -12.45873 -11.55721 -11.35150 -10.88547 -10.73469 -10.35877 -10.08083 -9.40488 -9.27729 -9.13236 -8.92622 -8.88382 -7.13568 -6.16978 -3.17716 1.40430 1.57986 3.48754 3.55349 3.64551 4.09808 4.61179 4.67744 5.00668 5.10412 5.36339 5.45062 5.53713 5.61428 5.80008 5.95496 6.06727 6.13497 6.24003 6.35449 6.49972 6.75149 6.91957 6.99628 7.74902 8.19895 8.68507 9.13382 9.99874 10.13986 11.31222 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058894 B = 0.009247 C = 0.008737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.318671 B = 3027.173869 C = 3204.170510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.210 3.790 3 H 0.061 0.939 4 N -0.732 5.732 5 C -0.334 4.334 6 H 0.067 0.933 7 C -0.043 4.043 8 N -0.942 5.942 9 Si 1.086 2.914 10 H -0.294 1.294 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.025 4.025 14 C -0.161 4.161 15 C 0.094 3.906 16 N -0.498 5.498 17 C 0.091 3.909 18 C -0.173 4.173 19 H 0.061 0.939 20 H 0.047 0.953 21 H 0.040 0.960 22 H 0.368 0.632 23 H 0.255 0.745 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.150 0.850 27 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 2.804 9.959 10.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.100 3.900 3 H 0.079 0.921 4 N -0.376 5.376 5 C -0.465 4.465 6 H 0.085 0.915 7 C -0.241 4.241 8 N -0.587 5.587 9 Si 0.917 3.083 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.219 1.219 13 C -0.034 4.034 14 C -0.181 4.181 15 C -0.063 4.063 16 N -0.208 5.208 17 C -0.066 4.066 18 C -0.193 4.193 19 H 0.080 0.920 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.203 0.797 23 H 0.066 0.934 24 H 0.151 0.849 25 H 0.169 0.831 26 H 0.168 0.832 27 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.889 2.480 9.053 9.575 hybrid contribution -0.707 0.309 0.835 1.137 sum -2.597 2.789 9.888 10.597 Atomic orbital electron populations 1.22400 0.97801 1.01231 1.00481 1.19190 0.92380 0.95031 0.83397 0.92145 1.42513 1.79401 1.09866 1.05833 1.20108 1.42197 0.95346 0.88812 0.91459 1.25811 0.99110 0.97463 1.01696 1.70822 1.51237 1.08249 1.28421 0.83137 0.76470 0.73711 0.74956 1.22047 1.21956 1.21926 1.20923 0.92738 0.94111 0.95650 1.22021 1.01288 0.95276 0.99534 1.22676 0.94583 1.00055 0.88944 1.67611 1.15851 1.08073 1.29247 1.22628 0.96228 0.90319 0.97399 1.22012 1.01640 1.01247 0.94423 0.92020 0.93351 0.94118 0.79731 0.93366 0.84876 0.83106 0.83238 0.85114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.47 37.16 0.35 -2.52 15 2 C 0.21 4.21 3.13 -69.08 -0.22 3.99 15 3 H 0.06 1.23 7.98 -51.93 -0.41 0.81 15 4 N -0.73 -18.17 5.08 -54.55 -0.28 -18.44 15 5 C -0.33 -9.27 9.93 -15.06 -0.15 -9.42 15 6 H 0.07 1.84 7.83 -52.49 -0.41 1.42 15 7 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 15 8 N -0.94 -28.96 13.70 55.49 0.76 -28.20 15 9 Si 1.09 25.79 29.92 -169.99 -5.09 20.70 15 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 15 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 15 13 C -0.03 -0.45 4.98 -104.32 -0.52 -0.97 15 14 C -0.16 -2.77 9.15 -39.44 -0.36 -3.13 15 15 C 0.09 1.47 11.18 -17.55 -0.20 1.28 15 16 N -0.50 -8.03 10.36 -13.25 -0.14 -8.17 15 17 C 0.09 1.33 11.18 -17.55 -0.20 1.13 15 18 C -0.17 -2.65 9.78 -39.44 -0.39 -3.03 15 19 H 0.06 1.18 8.14 -51.93 -0.42 0.76 15 20 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.37 9.35 5.00 -40.82 -0.20 9.15 15 23 H 0.26 7.71 6.77 -40.82 -0.28 7.44 15 24 H 0.13 2.32 7.03 -52.49 -0.37 1.95 15 25 H 0.15 1.93 8.06 -52.49 -0.42 1.51 15 26 H 0.15 1.67 8.06 -52.48 -0.42 1.25 15 27 H 0.13 1.70 8.06 -52.48 -0.42 1.27 15 LS Contribution 237.89 15.07 3.58 3.58 Total: -1.00 -31.52 237.89 -5.93 -37.45 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -3.01 Total: 7.09 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.77 Total: -14.02 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.35 Total: -54.82 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.09 Total: 20.70 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.52 -5.93 -37.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035693455.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.794 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds