Wall clock time and date at job start Mon Mar 30 2020 02:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47235 * 2 1 4 4 N 1.46507 * 109.46602 * 240.00073 * 2 1 3 5 5 C 1.36935 * 119.99742 * 85.00573 * 4 2 1 6 6 H 1.07999 * 120.00083 * 359.97438 * 5 4 2 7 7 C 1.38817 * 119.99986 * 179.97438 * 5 4 2 8 8 N 1.31617 * 119.99464 * 0.27719 * 7 5 4 9 9 Si 1.86800 * 119.99902 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47364 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46883 * 120.00276 * 9 7 5 12 12 H 1.48497 * 109.46870 * 240.00086 * 9 7 5 13 13 C 1.50697 * 109.47089 * 120.00476 * 2 1 3 14 14 C 1.38654 * 120.79061 * 79.71467 * 13 2 1 15 15 C 1.38204 * 119.16195 * 179.75543 * 14 13 2 16 16 N 1.31868 * 120.76191 * 0.53277 * 15 14 13 17 17 C 1.31866 * 121.72949 * 359.74263 * 16 15 14 18 18 C 1.38206 * 120.76327 * 359.97438 * 17 16 15 19 19 H 1.09005 * 109.47291 * 59.99545 * 1 2 3 20 20 H 1.09000 * 109.47695 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47240 * 299.99841 * 1 2 3 22 22 H 0.96999 * 120.00180 * 264.99500 * 4 2 1 23 23 H 0.97001 * 120.00638 * 359.71685 * 8 7 5 24 24 H 1.08001 * 120.42087 * 0.02562 * 14 13 2 25 25 H 1.07999 * 119.61595 * 180.25165 * 15 14 13 26 26 H 1.08003 * 119.62365 * 179.97438 * 17 16 15 27 27 H 1.08005 * 120.42093 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1490 -0.0074 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6121 -0.6617 -3.5092 8 7 2.9203 -1.9399 -3.4513 9 14 2.7899 0.2702 -5.1183 10 1 2.3752 1.6824 -4.9211 11 1 4.2069 0.2281 -5.5608 12 1 1.9295 -0.3590 -6.1523 13 6 2.0323 -0.7105 1.2304 14 6 2.0684 -2.0955 1.2852 15 6 2.5402 -2.7121 2.4285 16 7 2.9429 -1.9992 3.4622 17 6 2.9175 -0.6808 3.4475 18 6 2.4639 0.0051 2.3367 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 2.2489 -1.6318 -1.1528 23 1 2.8277 -2.4239 -2.6158 24 1 1.7361 -2.6849 0.4435 25 1 2.5754 -3.7904 2.4776 26 1 3.2551 -0.1307 4.3134 27 1 2.4459 1.0850 2.3305 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035693455.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:00 Heat of formation + Delta-G solvation = 19.722307 kcal Electronic energy + Delta-G solvation = -11494.231290 eV Core-core repulsion = 9444.245643 eV Total energy + Delta-G solvation = -2049.985648 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.17057 -37.75289 -34.80561 -32.23963 -31.98706 -29.86859 -26.10537 -24.95103 -24.19757 -21.81079 -19.55593 -18.09175 -17.20177 -16.52721 -16.12238 -15.75888 -15.23483 -15.05563 -14.47213 -14.20796 -14.02315 -13.17599 -12.77011 -12.65050 -12.50447 -12.02384 -11.85866 -11.35478 -11.09535 -10.51687 -10.44875 -10.09104 -9.19150 -8.41840 -5.36667 0.19573 0.28033 1.58275 1.69580 1.81033 2.69075 2.86951 3.38616 3.54349 3.63904 3.70903 3.95868 4.17352 4.24954 4.39240 4.57000 4.70041 4.81371 4.85431 4.94840 5.07823 5.30944 5.47267 5.60237 5.76841 6.46545 6.98997 7.04767 7.94422 8.05957 9.10022 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058894 B = 0.009247 C = 0.008737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.318671 B = 3027.173869 C = 3204.170510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.205 3.795 3 H 0.060 0.940 4 N -0.747 5.747 5 C -0.330 4.330 6 H 0.070 0.930 7 C -0.104 4.104 8 N -0.977 5.977 9 Si 1.133 2.867 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.291 1.291 13 C -0.044 4.044 14 C -0.177 4.177 15 C 0.094 3.906 16 N -0.510 5.510 17 C 0.095 3.905 18 C -0.170 4.170 19 H 0.046 0.954 20 H 0.041 0.959 21 H 0.072 0.928 22 H 0.361 0.639 23 H 0.243 0.757 24 H 0.120 0.880 25 H 0.175 0.825 26 H 0.189 0.811 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 4.084 11.215 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.097 3.903 3 H 0.077 0.923 4 N -0.390 5.390 5 C -0.461 4.461 6 H 0.088 0.912 7 C -0.295 4.295 8 N -0.625 5.625 9 Si 0.958 3.042 10 H -0.194 1.194 11 H -0.219 1.219 12 H -0.218 1.218 13 C -0.053 4.053 14 C -0.197 4.197 15 C -0.062 4.062 16 N -0.220 5.220 17 C -0.061 4.061 18 C -0.190 4.190 19 H 0.065 0.935 20 H 0.060 0.940 21 H 0.091 0.909 22 H 0.194 0.806 23 H 0.054 0.946 24 H 0.138 0.862 25 H 0.192 0.808 26 H 0.206 0.794 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.968 3.787 10.361 11.206 hybrid contribution -0.713 -0.058 0.590 0.927 sum -2.681 3.729 10.952 11.876 Atomic orbital electron populations 1.22239 0.96192 1.01083 1.01301 1.19354 0.93372 0.94699 0.82863 0.92251 1.42712 1.79787 1.09777 1.06746 1.20447 1.40220 0.95532 0.89905 0.91153 1.27208 0.99490 0.97568 1.05235 1.70936 1.54004 1.09523 1.28002 0.82549 0.76316 0.73896 0.71468 1.19412 1.21938 1.21832 1.20802 0.94367 0.94440 0.95716 1.22011 1.02455 0.95307 0.99938 1.23005 0.93720 1.01294 0.88214 1.67714 1.16036 1.09013 1.29194 1.23255 0.94697 0.89958 0.98195 1.22281 1.00604 1.02536 0.93627 0.93488 0.93991 0.90885 0.80556 0.94620 0.86208 0.80808 0.79443 0.82609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.47 71.98 0.68 -4.54 15 2 C 0.21 8.10 3.13 44.24 0.14 8.24 15 3 H 0.06 2.34 7.98 -2.39 -0.02 2.32 15 4 N -0.75 -37.45 5.08 -326.49 -1.66 -39.11 15 5 C -0.33 -18.36 9.93 84.04 0.83 -17.52 15 6 H 0.07 3.79 7.83 -2.91 -0.02 3.77 15 7 C -0.10 -6.01 5.50 84.86 0.47 -5.55 15 8 N -0.98 -61.27 13.70 21.65 0.30 -60.97 15 9 Si 1.13 51.84 29.92 68.60 2.05 53.89 15 10 H -0.27 -11.07 7.11 99.48 0.71 -10.36 15 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 15 12 H -0.29 -13.19 7.11 99.48 0.71 -12.48 15 13 C -0.04 -1.53 4.98 -19.67 -0.10 -1.63 15 14 C -0.18 -6.04 9.15 22.36 0.20 -5.83 15 15 C 0.09 2.81 11.18 84.68 0.95 3.76 15 16 N -0.51 -15.19 10.36 -195.84 -2.03 -17.22 15 17 C 0.10 2.47 11.18 84.68 0.95 3.41 15 18 C -0.17 -4.76 9.78 22.36 0.22 -4.54 15 19 H 0.05 1.76 8.14 -2.38 -0.02 1.74 15 20 H 0.04 1.50 8.14 -2.39 -0.02 1.48 15 21 H 0.07 2.08 8.14 -2.38 -0.02 2.06 15 22 H 0.36 18.92 5.00 -92.71 -0.46 18.46 15 23 H 0.24 15.24 6.77 -92.71 -0.63 14.61 15 24 H 0.12 4.33 7.03 -2.91 -0.02 4.31 15 25 H 0.17 4.21 8.06 -2.91 -0.02 4.19 15 26 H 0.19 3.32 8.06 -2.91 -0.02 3.30 15 27 H 0.16 3.48 8.06 -2.91 -0.02 3.46 15 Total: -1.00 -67.17 237.89 3.84 -63.33 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.84 Total: 24.29 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 4.34 Total: -24.20 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -3.39 Total: -117.30 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.05 Total: 53.89 kcal Total: -67.17 3.84 -63.33 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035693455.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.052 kcal (2) G-P(sol) polarization free energy of solvation -67.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds