Wall clock time and date at job start Mon Mar 30 2020 02:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.36935 * 119.99926 * 274.99989 * 4 2 1 6 6 H 1.08005 * 119.99877 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00369 * 179.73019 * 5 4 2 8 8 N 1.31617 * 119.99773 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00451 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47154 * 89.99247 * 9 7 5 11 11 H 1.48496 * 109.47375 * 209.99772 * 9 7 5 12 12 H 1.48502 * 109.46736 * 329.99467 * 9 7 5 13 13 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 14 14 C 1.38652 * 120.79010 * 279.72533 * 13 2 1 15 15 C 1.38204 * 119.15561 * 179.75629 * 14 13 2 16 16 N 1.31864 * 120.76947 * 0.52532 * 15 14 13 17 17 C 1.31872 * 121.72193 * 359.74499 * 16 15 14 18 18 C 1.38199 * 120.76890 * 359.97347 * 17 16 15 19 19 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 20 20 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 21 21 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 22 22 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 23 23 H 0.97004 * 120.00382 * 180.02562 * 8 7 5 24 24 H 1.07999 * 120.41913 * 359.97438 * 14 13 2 25 25 H 1.08005 * 119.61468 * 180.29218 * 15 14 13 26 26 H 1.08005 * 119.61770 * 180.02562 * 17 16 15 27 27 H 1.07999 * 120.41972 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1490 -0.0076 2.3757 6 1 1.8925 1.0405 2.4241 7 6 2.6063 -0.6632 3.5106 8 7 2.9138 -1.9417 3.4529 9 14 2.7840 0.2684 5.1199 10 1 1.5139 0.1823 5.8845 11 1 3.8842 -0.3287 5.9187 12 1 3.0951 1.6924 4.8356 13 6 2.0324 -0.7105 -1.2304 14 6 2.0793 -2.0953 -1.2810 15 6 2.5413 -2.7119 -2.4283 16 7 2.9439 -1.9990 -3.4619 17 6 2.9184 -0.6806 -3.4471 18 6 2.4639 0.0053 -2.3367 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 2.2490 -1.6319 1.1526 23 1 3.2330 -2.4001 4.2460 24 1 1.7555 -2.6846 -0.4358 25 1 2.5765 -3.7903 -2.4774 26 1 3.2560 -0.1304 -4.3130 27 1 2.4451 1.0851 -2.3308 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035693457.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:02 Heat of formation + Delta-G solvation = 20.490014 kcal Electronic energy + Delta-G solvation = -11456.908104 eV Core-core repulsion = 9406.955747 eV Total energy + Delta-G solvation = -2049.952357 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.07804 -37.52237 -34.53415 -32.24095 -31.96007 -30.00224 -26.20715 -24.82507 -24.12257 -21.60218 -19.48450 -17.64104 -17.16516 -16.52309 -16.26532 -15.29882 -15.22812 -14.92552 -14.39793 -14.12293 -13.82683 -13.23307 -12.80996 -12.71629 -12.45516 -12.28067 -11.93783 -11.71221 -11.07455 -10.42920 -10.37733 -10.00778 -9.07264 -7.96371 -5.25807 0.27921 0.37108 1.47784 1.49172 1.57482 2.54883 2.94918 3.38357 3.63023 3.74812 3.86302 4.09247 4.27596 4.34551 4.49329 4.68274 4.79143 4.92355 4.94245 5.04655 5.18155 5.40877 5.48292 5.61449 5.85299 6.25337 7.06642 7.31922 8.04178 8.28676 9.27327 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058632 B = 0.009207 C = 0.008691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.443441 B = 3040.414322 C = 3221.125463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.200 3.800 3 H 0.062 0.938 4 N -0.735 5.735 5 C -0.242 4.242 6 H 0.080 0.920 7 C -0.075 4.075 8 N -0.971 5.971 9 Si 0.974 3.026 10 H -0.287 1.287 11 H -0.297 1.297 12 H -0.268 1.268 13 C -0.043 4.043 14 C -0.173 4.173 15 C 0.091 3.909 16 N -0.511 5.511 17 C 0.093 3.907 18 C -0.170 4.170 19 H 0.048 0.952 20 H 0.071 0.929 21 H 0.041 0.959 22 H 0.375 0.625 23 H 0.251 0.749 24 H 0.121 0.879 25 H 0.173 0.827 26 H 0.187 0.813 27 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 3.655 -11.035 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.092 3.908 3 H 0.080 0.920 4 N -0.377 5.377 5 C -0.373 4.373 6 H 0.098 0.902 7 C -0.267 4.267 8 N -0.621 5.621 9 Si 0.803 3.197 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.193 1.193 13 C -0.051 4.051 14 C -0.194 4.194 15 C -0.065 4.065 16 N -0.221 5.221 17 C -0.064 4.064 18 C -0.190 4.190 19 H 0.067 0.933 20 H 0.089 0.911 21 H 0.060 0.940 22 H 0.208 0.792 23 H 0.060 0.940 24 H 0.139 0.861 25 H 0.190 0.810 26 H 0.204 0.796 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.184 3.378 -11.654 12.329 hybrid contribution -0.116 0.176 2.010 2.021 sum -2.300 3.554 -9.644 10.532 Atomic orbital electron populations 1.22256 0.96296 1.01090 1.01268 1.19426 0.93364 0.94861 0.83171 0.91983 1.42701 1.78597 1.10487 1.05901 1.19648 1.35316 0.94393 0.87983 0.90231 1.25561 1.02768 0.96860 1.01490 1.69816 1.52689 1.10180 1.29445 0.85135 0.76855 0.78096 0.79649 1.21402 1.22414 1.19258 1.20808 0.94223 0.94370 0.95742 1.22029 1.02138 0.95445 0.99745 1.22980 0.93977 1.01216 0.88293 1.67703 1.16032 1.09045 1.29345 1.23228 0.94971 0.89963 0.98237 1.22274 1.00607 1.02517 0.93625 0.93332 0.91060 0.94024 0.79210 0.94004 0.86096 0.80999 0.79613 0.82557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.47 71.98 0.68 -4.48 15 2 C 0.20 7.77 3.13 44.25 0.14 7.91 15 3 H 0.06 2.36 7.98 -2.39 -0.02 2.34 15 4 N -0.74 -36.70 5.08 -326.51 -1.66 -38.36 15 5 C -0.24 -13.22 9.93 84.03 0.83 -12.38 15 6 H 0.08 4.13 7.83 -2.91 -0.02 4.11 15 7 C -0.07 -4.24 5.50 84.86 0.47 -3.78 15 8 N -0.97 -59.21 13.06 21.65 0.28 -58.93 15 9 Si 0.97 45.68 29.55 68.60 2.03 47.71 15 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 15 11 H -0.30 -14.14 7.11 99.48 0.71 -13.44 15 12 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 13 C -0.04 -1.47 4.98 -19.67 -0.10 -1.57 15 14 C -0.17 -6.01 9.16 22.36 0.20 -5.80 15 15 C 0.09 2.79 11.18 84.68 0.95 3.74 15 16 N -0.51 -15.45 10.36 -195.84 -2.03 -17.48 15 17 C 0.09 2.41 11.18 84.68 0.95 3.36 15 18 C -0.17 -4.74 9.78 22.36 0.22 -4.52 15 19 H 0.05 1.77 8.14 -2.39 -0.02 1.75 15 20 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 21 H 0.04 1.48 8.14 -2.38 -0.02 1.46 15 22 H 0.37 20.06 6.13 -92.70 -0.57 19.49 15 23 H 0.25 14.88 8.31 -92.71 -0.77 14.11 15 24 H 0.12 4.50 7.00 -2.91 -0.02 4.48 15 25 H 0.17 4.29 8.06 -2.91 -0.02 4.27 15 26 H 0.19 3.34 8.06 -2.91 -0.02 3.32 15 27 H 0.16 3.45 8.06 -2.91 -0.02 3.42 15 Total: -1.00 -64.48 239.53 3.55 -60.93 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.59 Total: 23.66 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.34 Total: -17.53 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -3.40 Total: -114.76 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -64.48 3.55 -60.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035693457.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.417 kcal (2) G-P(sol) polarization free energy of solvation -64.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds