Wall clock time and date at job start Mon Mar 30 2020 01:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 120.00305 * 2 1 4 4 H 1.48502 * 109.46972 * 239.99658 * 3 2 1 5 5 H 1.48500 * 109.47158 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47358 * 119.99790 * 3 2 1 7 7 C 1.37879 * 119.99442 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99674 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00136 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.45984 * 299.97026 * 9 7 2 11 11 C 1.53126 * 109.45821 * 179.97438 * 9 7 2 12 12 C 1.53402 * 109.43565 * 169.96961 * 11 9 7 13 13 C 1.50647 * 108.38087 * 49.65297 * 12 11 9 14 14 N 1.36115 * 128.44262 * 163.77372 * 13 12 11 15 15 H 0.97004 * 126.50270 * 0.18253 * 14 13 12 16 16 C 1.35308 * 107.00689 * 180.28759 * 14 13 12 17 17 N 1.30754 * 108.76604 * 359.59776 * 16 14 13 18 18 C 1.33579 * 109.14602 * 0.22448 * 17 16 14 19 19 C 1.50867 * 128.03567 * 180.12917 * 18 17 16 20 20 H 0.97001 * 119.99445 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47214 * 49.98184 * 11 9 7 22 22 H 1.08994 * 109.48461 * 289.96175 * 11 9 7 23 23 H 1.09000 * 109.68082 * 289.92727 * 12 11 9 24 24 H 1.09005 * 109.71061 * 169.39171 * 12 11 9 25 25 H 1.08002 * 125.62204 * 179.86879 * 16 14 13 26 26 H 1.09010 * 109.67280 * 283.04490 * 19 18 17 27 27 H 1.09004 * 109.67546 * 43.57535 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.6243 -2.5567 0.8906 11 6 2.2461 -3.6629 0.0005 12 6 1.4953 -4.9767 0.2525 13 6 0.3208 -5.0407 -0.6888 14 7 -0.4316 -6.1221 -1.0309 15 1 -0.3181 -7.0296 -0.7076 16 6 -1.3665 -5.6919 -1.9093 17 7 -1.2086 -4.4075 -2.0962 18 6 -0.1800 -3.9806 -1.3586 19 6 0.3684 -2.5793 -1.2509 20 1 -0.4849 0.8401 -0.0004 21 1 2.9845 -3.5096 0.7876 22 1 2.7490 -3.7112 -0.9653 23 1 1.1418 -5.0057 1.2832 24 1 2.1597 -5.8210 0.0684 25 1 -2.1219 -6.3071 -2.3756 26 1 0.9633 -2.3490 -2.1349 27 1 -0.4540 -1.8688 -1.1663 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039133043.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:03 Heat of formation + Delta-G solvation = 38.950375 kcal Electronic energy + Delta-G solvation = -11826.627548 eV Core-core repulsion = 9777.475692 eV Total energy + Delta-G solvation = -2049.151856 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.54555 -35.96773 -32.62927 -32.11466 -28.72661 -28.21778 -24.69723 -22.43415 -21.20504 -20.29171 -17.87262 -17.18088 -16.19037 -14.74655 -14.44486 -13.93381 -13.37165 -12.89619 -12.56150 -12.20512 -11.69286 -11.22218 -10.96395 -10.79392 -10.52076 -10.28199 -9.78505 -9.42994 -9.14600 -8.85241 -8.77751 -8.29842 -7.38127 -5.91222 -3.98149 2.63410 3.37675 3.42806 3.44690 3.62239 3.86615 4.49953 5.14046 5.40038 5.43237 5.71552 5.87330 6.06895 6.23516 6.32989 6.64853 6.76392 6.86229 7.10478 7.18336 7.46369 7.52511 7.81294 7.98088 8.05205 8.20752 8.49832 8.78839 9.05938 9.66615 11.15095 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.065424 B = 0.010849 C = 0.009667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.874690 B = 2580.177428 C = 2895.783265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.052 3.948 10 H 0.028 0.972 11 C -0.105 4.105 12 C -0.038 4.038 13 C -0.043 4.043 14 N -0.570 5.570 15 H 0.410 0.590 16 C 0.151 3.849 17 N -0.491 5.491 18 C 0.029 3.971 19 C -0.028 4.028 20 H 0.261 0.739 21 H 0.059 0.941 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.198 0.802 26 H 0.052 0.948 27 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -10.703 -0.460 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.556 4.556 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.046 0.954 11 C -0.143 4.143 12 C -0.076 4.076 13 C -0.157 4.157 14 N -0.174 5.174 15 H 0.246 0.754 16 C -0.130 4.130 17 N -0.210 5.210 18 C -0.100 4.100 19 C -0.067 4.067 20 H 0.071 0.929 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.215 0.785 26 H 0.071 0.929 27 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.040 -10.024 -0.996 10.074 hybrid contribution 0.754 -0.246 0.571 0.978 sum 0.715 -10.271 -0.425 10.304 Atomic orbital electron populations 1.69909 1.05859 1.26579 1.50168 1.24998 0.94828 0.99062 0.95032 0.86681 0.79591 0.83311 0.78521 1.20291 1.21363 1.20372 1.21126 0.92834 0.90444 1.51168 0.92559 1.18710 0.92349 0.91701 0.93938 0.95413 1.21682 0.98604 0.93387 1.00605 1.20141 0.91863 0.99661 0.95961 1.21175 1.00347 0.87574 1.06603 1.42893 1.27085 1.10514 1.36937 0.75387 1.24880 0.97367 0.93025 0.97763 1.70030 1.18525 1.08453 1.24024 1.21559 0.94094 0.97789 0.96574 1.20293 1.00214 0.87138 0.99018 0.92898 0.92271 0.92985 0.91476 0.92667 0.78498 0.92931 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 11.46 55.43 0.63 -25.24 15 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 15 3 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.52 -14.21 8.53 -34.44 -0.29 -14.50 15 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 15 9 C 0.05 1.31 2.07 -91.53 -0.19 1.12 15 10 H 0.03 0.77 8.11 -51.93 -0.42 0.34 15 11 C -0.10 -2.16 5.16 -26.46 -0.14 -2.29 15 12 C -0.04 -0.66 6.30 -27.70 -0.17 -0.83 15 13 C -0.04 -0.83 7.08 -81.86 -0.58 -1.41 15 14 N -0.57 -8.66 6.14 -10.29 -0.06 -8.72 15 15 H 0.41 4.34 8.96 -40.82 -0.37 3.97 15 16 C 0.15 2.48 13.05 -89.92 -1.17 1.31 15 17 N -0.49 -10.68 11.25 -10.74 -0.12 -10.81 15 18 C 0.03 0.67 6.98 -82.89 -0.58 0.09 15 19 C -0.03 -0.72 5.19 -27.63 -0.14 -0.86 15 20 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 21 H 0.06 1.15 8.11 -51.93 -0.42 0.73 15 22 H 0.05 1.07 8.12 -51.93 -0.42 0.65 15 23 H 0.07 1.12 8.14 -51.93 -0.42 0.70 15 24 H 0.05 0.80 8.14 -51.93 -0.42 0.38 15 25 H 0.20 2.23 8.06 -52.49 -0.42 1.81 15 26 H 0.05 1.37 8.12 -51.92 -0.42 0.95 15 27 H 0.10 2.84 6.44 -51.93 -0.33 2.50 15 LS Contribution 227.61 15.07 3.43 3.43 Total: -1.00 -31.74 227.61 -7.70 -39.44 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.19 Total: 1.25 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.36 Total: -15.72 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.45 Total: -44.76 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.74 -7.70 -39.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039133043.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.392 kcal (2) G-P(sol) polarization free energy of solvation -31.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds