Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36806 * 119.99587 * 2 1 4 4 H 1.08004 * 119.99786 * 145.44473 * 3 2 1 5 5 C 1.38747 * 120.00274 * 325.44070 * 3 2 1 6 6 N 1.31629 * 119.99941 * 157.35463 * 5 3 2 7 7 Si 1.86799 * 120.00124 * 337.35631 * 5 3 2 8 8 H 1.48501 * 109.46912 * 95.39306 * 7 5 3 9 9 H 1.48497 * 109.47125 * 215.38940 * 7 5 3 10 10 H 1.48498 * 109.47007 * 335.39377 * 7 5 3 11 11 C 1.39403 * 120.00293 * 180.02562 * 2 1 3 12 12 C 1.38923 * 120.12217 * 89.97254 * 11 2 1 13 13 C 1.38135 * 119.98054 * 180.02562 * 12 11 2 14 14 C 1.38364 * 120.22858 * 359.74145 * 13 12 11 15 15 C 1.38225 * 120.24593 * 0.51916 * 14 13 12 16 16 C 1.38699 * 120.01468 * 359.48014 * 15 14 13 17 17 N 1.39766 * 120.11624 * 180.28013 * 16 15 14 18 18 H 1.09001 * 109.46912 * 270.70140 * 1 2 3 19 19 H 1.09000 * 109.47657 * 30.70440 * 1 2 3 20 20 H 1.09001 * 109.47165 * 150.70874 * 1 2 3 21 21 H 0.97003 * 119.99794 * 179.97438 * 6 5 3 22 22 H 1.07993 * 120.00739 * 0.02562 * 12 11 2 23 23 H 1.07994 * 119.88239 * 179.97438 * 13 12 11 24 24 H 1.08002 * 119.87590 * 180.27681 * 14 13 12 25 25 H 1.08009 * 119.99880 * 179.76262 * 15 14 13 26 26 H 0.97002 * 120.00352 * 359.97438 * 17 16 15 27 27 H 0.97006 * 120.00317 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1848 0.0000 4 1 3.0860 1.2674 0.5305 5 6 1.6388 2.2804 -0.6816 6 7 2.0119 3.4970 -0.3450 7 14 0.4225 2.0289 -2.0768 8 1 -0.9620 2.1653 -1.5572 9 1 0.6588 3.0493 -3.1295 10 1 0.6036 0.6722 -2.6529 11 6 2.1620 -1.2072 -0.0005 12 6 2.5101 -1.8107 -1.2024 13 6 3.2004 -3.0072 -1.1996 14 6 3.5520 -3.6058 -0.0026 15 6 3.2057 -3.0163 1.1987 16 6 2.5127 -1.8149 1.2077 17 7 2.1666 -1.2140 2.4212 18 1 -0.3633 0.0126 1.0276 19 1 -0.3634 0.8836 -0.5247 20 1 -0.3633 -0.8963 -0.5028 21 1 1.6555 4.2629 -0.8218 22 1 2.2412 -1.3446 -2.1387 23 1 3.4699 -3.4752 -2.1348 24 1 4.0956 -4.5390 -0.0070 25 1 3.4788 -3.4889 2.1307 26 1 2.4107 -1.6373 3.2592 27 1 1.6815 -0.3739 2.4256 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050015003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = 56.409815 kcal Electronic energy + Delta-G solvation = -11859.953583 eV Core-core repulsion = 9811.558825 eV Total energy + Delta-G solvation = -2048.394758 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.83097 -35.35532 -33.63872 -31.68246 -29.28154 -27.76510 -25.97301 -23.54195 -21.47320 -20.27511 -17.10478 -16.39526 -15.99870 -15.67349 -14.87750 -13.68613 -13.48907 -13.03377 -12.86705 -12.55887 -12.33084 -12.04037 -11.44902 -10.96737 -10.64804 -10.45480 -10.03648 -9.94993 -9.60113 -8.60667 -7.98545 -7.05927 -6.72417 -6.04556 -3.47135 2.15107 2.34497 3.27621 3.44553 3.49595 4.47283 4.57605 4.65941 4.98593 5.28887 5.56078 5.71482 5.98804 6.20361 6.21418 6.40359 6.47131 6.62204 6.67889 6.92894 7.20823 7.40111 7.54107 7.99643 8.17182 8.45113 8.52161 9.01447 9.68414 10.05800 11.10511 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047396 B = 0.013624 C = 0.012231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.623276 B = 2054.636059 C = 2288.635048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.571 5.571 3 C -0.268 4.268 4 H 0.083 0.917 5 C 0.035 3.965 6 N -0.898 5.898 7 Si 0.886 3.114 8 H -0.286 1.286 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.131 3.869 12 C -0.092 4.092 13 C -0.180 4.180 14 C -0.096 4.096 15 C -0.206 4.206 16 C 0.202 3.798 17 N -0.871 5.871 18 H 0.018 0.982 19 H 0.046 0.954 20 H 0.034 0.966 21 H 0.264 0.736 22 H 0.114 0.886 23 H 0.107 0.893 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.386 0.614 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.840 -10.882 1.723 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.292 5.292 3 C -0.395 4.395 4 H 0.100 0.900 5 C -0.165 4.165 6 N -0.538 5.538 7 Si 0.717 3.283 8 H -0.215 1.215 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.033 3.967 12 C -0.113 4.113 13 C -0.201 4.201 14 C -0.115 4.115 15 C -0.230 4.230 16 C 0.095 3.905 17 N -0.410 5.410 18 H 0.037 0.963 19 H 0.064 0.936 20 H 0.052 0.948 21 H 0.074 0.926 22 H 0.132 0.868 23 H 0.125 0.875 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.212 0.788 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.868 -10.650 1.662 10.814 hybrid contribution -0.690 0.226 -0.544 0.908 sum -1.559 -10.424 1.117 10.599 Atomic orbital electron populations 1.21408 0.83900 0.99125 0.98562 1.41376 1.00546 1.00679 1.86555 1.18729 1.07508 0.85313 1.27972 0.89973 1.25376 0.98335 0.95125 0.97705 1.69864 1.45928 0.97563 1.40494 0.86847 0.80351 0.77625 0.83525 1.21474 1.23005 1.19513 1.17224 0.99948 0.89561 0.89932 1.21576 0.97170 0.94364 0.98152 1.20692 1.04648 0.97609 0.97176 1.20637 0.99716 0.98994 0.92182 1.20333 1.07585 0.97229 0.97867 1.18493 0.93132 0.91633 0.87274 1.42404 1.66155 1.28424 1.04009 0.96333 0.93607 0.94753 0.92583 0.86842 0.87525 0.87361 0.87393 0.78808 0.76299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.52 9.55 59.84 0.57 3.09 15 2 N -0.57 -13.83 1.72 -120.35 -0.21 -14.04 15 3 C -0.27 -7.51 9.92 -15.14 -0.15 -7.66 15 4 H 0.08 2.52 8.06 -52.48 -0.42 2.10 15 5 C 0.04 1.01 5.32 -17.45 -0.09 0.92 15 6 N -0.90 -27.22 13.97 55.49 0.78 -26.44 15 7 Si 0.89 22.32 24.92 -169.99 -4.24 18.08 15 8 H -0.29 -6.97 6.67 56.52 0.38 -6.60 15 9 H -0.30 -7.72 7.11 56.52 0.40 -7.31 15 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 15 11 C 0.13 2.88 5.06 -83.61 -0.42 2.46 15 12 C -0.09 -1.89 9.97 -39.37 -0.39 -2.28 15 13 C -0.18 -3.14 10.03 -39.57 -0.40 -3.54 15 14 C -0.10 -1.56 10.04 -39.54 -0.40 -1.95 15 15 C -0.21 -3.48 9.89 -39.42 -0.39 -3.87 15 16 C 0.20 3.93 6.78 -83.52 -0.57 3.36 15 17 N -0.87 -15.08 9.08 32.55 0.30 -14.79 15 18 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 15 19 H 0.05 1.08 2.85 -51.93 -0.15 0.93 15 20 H 0.03 0.69 8.04 -51.93 -0.42 0.27 15 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 15 22 H 0.11 2.40 8.06 -52.49 -0.42 1.97 15 23 H 0.11 1.59 8.06 -52.49 -0.42 1.16 15 24 H 0.11 1.41 8.06 -52.49 -0.42 0.99 15 25 H 0.11 1.54 8.06 -52.48 -0.42 1.11 15 26 H 0.39 5.33 8.84 -40.82 -0.36 4.96 15 27 H 0.41 7.71 8.12 -40.82 -0.33 7.38 15 LS Contribution 231.71 15.07 3.49 3.49 Total: -1.00 -30.22 231.71 -5.07 -35.29 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -2.95 Total: 7.88 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.24 Total: -9.47 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.86 Total: -55.27 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.24 Total: 18.08 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.22 -5.07 -35.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050015003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.700 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds