Wall clock time and date at job start Mon Mar 30 2020 02:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36806 * 119.99587 * 2 1 4 4 H 1.08004 * 119.99786 * 145.44473 * 3 2 1 5 5 C 1.38747 * 120.00274 * 325.44070 * 3 2 1 6 6 N 1.31629 * 119.99941 * 157.35463 * 5 3 2 7 7 Si 1.86799 * 120.00124 * 337.35631 * 5 3 2 8 8 H 1.48501 * 109.46912 * 95.39306 * 7 5 3 9 9 H 1.48497 * 109.47125 * 215.38940 * 7 5 3 10 10 H 1.48498 * 109.47007 * 335.39377 * 7 5 3 11 11 C 1.39403 * 120.00293 * 180.02562 * 2 1 3 12 12 C 1.38923 * 120.12217 * 89.97254 * 11 2 1 13 13 C 1.38135 * 119.98054 * 180.02562 * 12 11 2 14 14 C 1.38364 * 120.22858 * 359.74145 * 13 12 11 15 15 C 1.38225 * 120.24593 * 0.51916 * 14 13 12 16 16 C 1.38699 * 120.01468 * 359.48014 * 15 14 13 17 17 N 1.39766 * 120.11624 * 180.28013 * 16 15 14 18 18 H 1.09001 * 109.46912 * 270.70140 * 1 2 3 19 19 H 1.09000 * 109.47657 * 30.70440 * 1 2 3 20 20 H 1.09001 * 109.47165 * 150.70874 * 1 2 3 21 21 H 0.97003 * 119.99794 * 179.97438 * 6 5 3 22 22 H 1.07993 * 120.00739 * 0.02562 * 12 11 2 23 23 H 1.07994 * 119.88239 * 179.97438 * 13 12 11 24 24 H 1.08002 * 119.87590 * 180.27681 * 14 13 12 25 25 H 1.08009 * 119.99880 * 179.76262 * 15 14 13 26 26 H 0.97002 * 120.00352 * 359.97438 * 17 16 15 27 27 H 0.97006 * 120.00317 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1489 1.1848 0.0000 4 1 3.0860 1.2674 0.5305 5 6 1.6388 2.2804 -0.6816 6 7 2.0119 3.4970 -0.3450 7 14 0.4225 2.0289 -2.0768 8 1 -0.9620 2.1653 -1.5572 9 1 0.6588 3.0493 -3.1295 10 1 0.6036 0.6722 -2.6529 11 6 2.1620 -1.2072 -0.0005 12 6 2.5101 -1.8107 -1.2024 13 6 3.2004 -3.0072 -1.1996 14 6 3.5520 -3.6058 -0.0026 15 6 3.2057 -3.0163 1.1987 16 6 2.5127 -1.8149 1.2077 17 7 2.1666 -1.2140 2.4212 18 1 -0.3633 0.0126 1.0276 19 1 -0.3634 0.8836 -0.5247 20 1 -0.3633 -0.8963 -0.5028 21 1 1.6555 4.2629 -0.8218 22 1 2.2412 -1.3446 -2.1387 23 1 3.4699 -3.4752 -2.1348 24 1 4.0956 -4.5390 -0.0070 25 1 3.4788 -3.4889 2.1307 26 1 2.4107 -1.6373 3.2592 27 1 1.6815 -0.3739 2.4256 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050015003.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:38 Heat of formation + Delta-G solvation = 36.072045 kcal Electronic energy + Delta-G solvation = -11860.835495 eV Core-core repulsion = 9811.558825 eV Total energy + Delta-G solvation = -2049.276670 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.32975 -37.12082 -35.05309 -33.76562 -30.80227 -29.21679 -27.91752 -25.33618 -22.93048 -21.86470 -19.08341 -17.93912 -17.49432 -17.45125 -16.61176 -15.15275 -15.06769 -14.75683 -14.50112 -14.35444 -14.24450 -13.59891 -13.16866 -12.65058 -12.35466 -12.09670 -11.96896 -11.59036 -11.33852 -10.70072 -9.44713 -9.00674 -8.24842 -8.14352 -5.63728 0.70622 0.92833 1.26676 1.39238 1.50409 2.37132 3.01123 3.15815 3.24672 3.38035 4.24167 4.39254 4.46382 4.64424 4.72919 4.85242 4.87320 4.99562 5.26489 5.54994 5.77601 5.84969 5.97893 6.10713 6.26525 6.73995 7.01201 7.19921 7.65548 8.03653 8.94994 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047396 B = 0.013624 C = 0.012231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.623276 B = 2054.636059 C = 2288.635048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.575 5.575 3 C -0.253 4.253 4 H 0.041 0.959 5 C -0.020 4.020 6 N -0.945 5.945 7 Si 0.951 3.049 8 H -0.271 1.271 9 H -0.308 1.308 10 H -0.265 1.265 11 C 0.083 3.917 12 C -0.110 4.110 13 C -0.180 4.180 14 C -0.084 4.084 15 C -0.202 4.202 16 C 0.189 3.811 17 N -0.867 5.867 18 H 0.032 0.968 19 H 0.032 0.968 20 H 0.055 0.945 21 H 0.265 0.735 22 H 0.097 0.903 23 H 0.134 0.866 24 H 0.151 0.849 25 H 0.140 0.860 26 H 0.402 0.598 27 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.974 -13.565 1.637 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.296 5.296 3 C -0.382 4.382 4 H 0.059 0.941 5 C -0.216 4.216 6 N -0.589 5.589 7 Si 0.780 3.220 8 H -0.198 1.198 9 H -0.237 1.237 10 H -0.190 1.190 11 C -0.013 4.013 12 C -0.131 4.131 13 C -0.201 4.201 14 C -0.102 4.102 15 C -0.225 4.225 16 C 0.081 3.919 17 N -0.406 5.406 18 H 0.050 0.950 19 H 0.050 0.950 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.116 0.884 23 H 0.152 0.848 24 H 0.168 0.832 25 H 0.158 0.842 26 H 0.232 0.768 27 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -1.007 -13.393 1.598 13.526 hybrid contribution -0.548 0.918 -0.422 1.150 sum -1.555 -12.475 1.176 12.626 Atomic orbital electron populations 1.21457 0.82857 0.99350 0.99469 1.41274 1.01217 1.00384 1.86747 1.18502 1.06112 0.87106 1.26475 0.94135 1.25967 1.01057 0.94712 0.99886 1.69983 1.48520 0.98418 1.41986 0.85783 0.78890 0.77257 0.80037 1.19811 1.23666 1.18961 1.17522 1.02471 0.89752 0.91597 1.21584 0.98509 0.95977 0.97024 1.20991 1.03488 0.96356 0.99221 1.21138 0.98106 0.99854 0.91119 1.20745 1.05993 0.95975 0.99790 1.18653 0.93690 0.92639 0.86915 1.42358 1.65833 1.27973 1.04446 0.95010 0.95004 0.92677 0.92628 0.88437 0.84787 0.83174 0.84206 0.76849 0.77492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.86 9.55 127.77 1.22 6.08 15 2 N -0.58 -27.95 1.72 -534.68 -0.92 -28.87 15 3 C -0.25 -14.60 9.92 84.04 0.83 -13.77 15 4 H 0.04 2.63 8.06 -2.91 -0.02 2.60 15 5 C -0.02 -1.15 5.32 84.84 0.45 -0.70 15 6 N -0.95 -59.12 13.97 21.64 0.30 -58.81 15 7 Si 0.95 46.86 24.92 68.60 1.71 48.57 15 8 H -0.27 -12.54 6.67 99.48 0.66 -11.88 15 9 H -0.31 -15.33 7.11 99.48 0.71 -14.62 15 10 H -0.26 -12.68 7.11 99.48 0.71 -11.97 15 11 C 0.08 3.62 5.06 38.46 0.19 3.82 15 12 C -0.11 -4.42 9.97 22.41 0.22 -4.20 15 13 C -0.18 -5.70 10.03 22.28 0.22 -5.48 15 14 C -0.08 -2.32 10.04 22.30 0.22 -2.10 15 15 C -0.20 -6.05 9.89 22.38 0.22 -5.83 15 16 C 0.19 7.03 6.78 38.34 0.26 7.29 15 17 N -0.87 -29.06 9.08 -50.95 -0.46 -29.53 15 18 H 0.03 1.28 8.14 -2.39 -0.02 1.26 15 19 H 0.03 1.46 2.85 -2.39 -0.01 1.46 15 20 H 0.05 2.13 8.04 -2.39 -0.02 2.11 15 21 H 0.26 15.64 8.31 -92.71 -0.77 14.86 15 22 H 0.10 4.11 8.06 -2.91 -0.02 4.09 15 23 H 0.13 3.46 8.06 -2.91 -0.02 3.44 15 24 H 0.15 2.96 8.06 -2.91 -0.02 2.93 15 25 H 0.14 3.29 8.06 -2.91 -0.02 3.26 15 26 H 0.40 10.36 8.84 -92.71 -0.82 9.54 15 27 H 0.40 15.03 8.12 -92.70 -0.75 14.28 15 Total: -1.00 -66.24 231.71 4.06 -62.18 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.43 Total: 21.35 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: 3.85 Total: -14.90 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -1.08 Total: -117.21 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.71 Total: 48.57 kcal Total: -66.24 4.06 -62.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050015003.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.257 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds