Wall clock time and date at job start Mon Mar 30 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38671 * 120.41986 * 2 1 4 4 C 1.38636 * 118.42054 * 180.24760 * 3 2 1 5 5 C 1.38226 * 119.15879 * 359.75082 * 4 3 2 6 6 N 1.31857 * 120.76445 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.72769 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.61986 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.46769 * 90.00201 * 8 7 6 10 10 C 1.36943 * 119.99752 * 179.72432 * 9 8 7 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 8 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 8 13 13 N 1.31624 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47290 * 120.00044 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00049 * 14 12 10 18 18 H 1.09004 * 109.47055 * 270.24935 * 1 2 3 19 19 H 1.09000 * 109.47234 * 30.24790 * 1 2 3 20 20 H 1.08999 * 109.47459 * 150.25014 * 1 2 3 21 21 H 1.07997 * 120.79303 * 359.97298 * 3 2 1 22 22 H 1.08004 * 120.42036 * 179.73099 * 4 3 2 23 23 H 1.08004 * 119.61847 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.47210 * 330.00558 * 8 7 6 25 25 H 1.08994 * 109.47121 * 210.00528 * 8 7 6 26 26 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 27 27 H 0.96999 * 119.99739 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0053 5 6 4.2256 -0.0824 -0.0051 6 7 3.5254 -1.1997 0.0006 7 6 2.2066 -1.1917 0.0067 8 6 1.4539 -2.4972 0.0124 9 7 1.2164 -2.9178 1.3954 10 6 0.5401 -4.0809 1.6508 11 1 0.1857 -4.6903 0.8326 12 6 0.3100 -4.4766 2.9613 13 7 0.7414 -3.7335 3.9584 14 14 -0.6119 -6.0634 3.3096 15 1 -0.9866 -6.7101 2.0265 16 1 0.2577 -6.9801 4.0899 17 1 -1.8392 -5.7619 4.0895 18 1 -0.3633 0.0045 1.0277 19 1 -0.3634 0.8877 -0.5177 20 1 -0.3634 -0.8922 -0.5099 21 1 1.6890 2.1423 -0.0004 22 1 4.1736 2.0592 -0.0098 23 1 5.3046 -0.1287 -0.0087 24 1 2.0410 -3.2574 -0.5028 25 1 0.4991 -2.3683 -0.4973 26 1 1.5343 -2.3703 2.1303 27 1 0.5810 -4.0102 4.8742 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070908791.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:25 Heat of formation + Delta-G solvation = 42.043276 kcal Electronic energy + Delta-G solvation = -11416.358799 eV Core-core repulsion = 9367.341061 eV Total energy + Delta-G solvation = -2049.017738 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.95359 -34.84952 -33.22999 -32.19027 -30.18759 -27.14176 -25.79397 -23.05622 -22.01665 -20.90105 -17.30919 -16.37176 -15.93568 -14.82446 -14.47610 -13.95656 -13.34219 -12.95590 -12.89498 -12.52972 -12.30639 -12.11416 -11.74640 -11.01554 -10.81342 -10.71041 -10.04365 -9.77319 -9.39690 -8.99762 -8.85565 -8.44482 -6.89646 -5.73213 -3.02602 1.43252 1.60241 3.45992 3.51272 3.53888 4.10787 4.63456 4.75047 5.02504 5.12827 5.24383 5.34199 5.60913 5.67471 5.88704 5.97447 6.10016 6.18886 6.26973 6.40139 6.51470 6.65261 6.82634 7.08994 7.72516 8.43291 8.44551 9.55705 10.11257 10.47371 11.49683 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.060548 B = 0.008920 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.335054 B = 3138.197805 C = 3272.508562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.122 4.122 3 C -0.085 4.085 4 C -0.181 4.181 5 C 0.086 3.914 6 N -0.469 5.469 7 C 0.135 3.865 8 C 0.195 3.805 9 N -0.722 5.722 10 C -0.238 4.238 11 H 0.073 0.927 12 C -0.014 4.014 13 N -0.933 5.933 14 Si 0.909 3.091 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.292 1.292 18 H 0.078 0.922 19 H 0.058 0.942 20 H 0.078 0.922 21 H 0.129 0.871 22 H 0.128 0.872 23 H 0.150 0.850 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.385 0.615 27 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 9.898 -8.314 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.202 4.202 5 C -0.071 4.071 6 N -0.177 5.177 7 C -0.003 4.003 8 C 0.068 3.932 9 N -0.366 5.366 10 C -0.368 4.368 11 H 0.091 0.909 12 C -0.209 4.209 13 N -0.581 5.581 14 Si 0.740 3.260 15 H -0.205 1.205 16 H -0.219 1.219 17 H -0.219 1.219 18 H 0.097 0.903 19 H 0.077 0.923 20 H 0.097 0.903 21 H 0.147 0.853 22 H 0.146 0.854 23 H 0.167 0.833 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.218 0.782 27 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.474 8.920 -8.351 12.467 hybrid contribution -0.641 0.272 0.623 0.935 sum 1.833 9.192 -7.727 12.148 Atomic orbital electron populations 1.20798 0.90124 1.02534 1.03308 1.20808 0.97845 0.93454 1.00296 1.21417 0.94141 0.97873 0.97648 1.22029 0.95255 0.99334 1.03536 1.22705 1.00097 0.87867 0.96457 1.67573 1.08176 1.31097 1.10901 1.21602 0.89411 0.95738 0.93560 1.19652 0.94983 0.88719 0.89889 1.42208 1.68146 1.26179 1.00093 1.19286 1.27448 0.98243 0.91871 0.90889 1.24752 1.01668 0.99011 0.95513 1.69695 1.51363 1.38854 0.98219 0.86084 0.79067 0.83042 0.77797 1.20475 1.21873 1.21897 0.90315 0.92268 0.90327 0.85347 0.85399 0.83292 0.94534 0.94253 0.78192 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.62 36.00 0.35 -1.31 15 2 C -0.12 -2.04 5.90 -104.48 -0.62 -2.66 15 3 C -0.08 -1.20 9.86 -39.27 -0.39 -1.59 15 4 C -0.18 -2.44 10.11 -39.44 -0.40 -2.84 15 5 C 0.09 1.34 11.18 -17.55 -0.20 1.15 15 6 N -0.47 -9.19 10.27 -9.47 -0.10 -9.29 15 7 C 0.14 2.66 6.15 -82.59 -0.51 2.16 15 8 C 0.20 4.27 6.15 -5.19 -0.03 4.24 15 9 N -0.72 -19.19 5.59 -61.09 -0.34 -19.53 15 10 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 15 11 H 0.07 2.00 7.83 -52.49 -0.41 1.59 15 12 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 15 13 N -0.93 -28.94 13.06 55.49 0.72 -28.21 15 14 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 15 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 16 H -0.29 -7.34 7.11 56.52 0.40 -6.94 15 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 19 H 0.06 0.70 8.10 -51.93 -0.42 0.28 15 20 H 0.08 1.21 5.96 -51.93 -0.31 0.90 15 21 H 0.13 1.41 8.06 -52.49 -0.42 0.99 15 22 H 0.13 1.27 8.06 -52.48 -0.42 0.84 15 23 H 0.15 1.85 8.06 -52.48 -0.42 1.42 15 24 H 0.04 0.83 8.14 -51.93 -0.42 0.41 15 25 H 0.04 0.81 5.93 -51.93 -0.31 0.50 15 26 H 0.38 11.01 7.66 -40.82 -0.31 10.70 15 27 H 0.25 7.58 8.31 -40.82 -0.34 7.24 15 LS Contribution 238.50 15.07 3.59 3.59 Total: -1.00 -32.25 238.50 -6.19 -38.44 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -3.01 Total: 5.60 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.04 Total: -8.27 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.29 Total: -57.03 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -32.25 -6.19 -38.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070908791.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.482 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds