Wall clock time and date at job start Mon Mar 30 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38671 * 120.41986 * 2 1 4 4 C 1.38636 * 118.42054 * 180.24760 * 3 2 1 5 5 C 1.38226 * 119.15879 * 359.75082 * 4 3 2 6 6 N 1.31857 * 120.76445 * 359.97438 * 5 4 3 7 7 C 1.31876 * 121.72769 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.61986 * 179.97438 * 7 6 5 9 9 N 1.46498 * 109.46769 * 90.00201 * 8 7 6 10 10 C 1.36943 * 119.99752 * 179.72432 * 9 8 7 11 11 H 1.08002 * 119.99793 * 0.27665 * 10 9 8 12 12 C 1.38811 * 120.00012 * 180.27737 * 10 9 8 13 13 N 1.31624 * 119.99698 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47159 * 0.02562 * 14 12 10 16 16 H 1.48505 * 109.47290 * 120.00044 * 14 12 10 17 17 H 1.48503 * 109.47163 * 240.00049 * 14 12 10 18 18 H 1.09004 * 109.47055 * 270.24935 * 1 2 3 19 19 H 1.09000 * 109.47234 * 30.24790 * 1 2 3 20 20 H 1.08999 * 109.47459 * 150.25014 * 1 2 3 21 21 H 1.07997 * 120.79303 * 359.97298 * 3 2 1 22 22 H 1.08004 * 120.42036 * 179.73099 * 4 3 2 23 23 H 1.08004 * 119.61847 * 180.02562 * 5 4 3 24 24 H 1.09004 * 109.47210 * 330.00558 * 8 7 6 25 25 H 1.08994 * 109.47121 * 210.00528 * 8 7 6 26 26 H 0.97001 * 120.00384 * 0.02562 * 9 8 7 27 27 H 0.96999 * 119.99739 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1958 0.0000 4 6 3.5946 1.1474 -0.0053 5 6 4.2256 -0.0824 -0.0051 6 7 3.5254 -1.1997 0.0006 7 6 2.2066 -1.1917 0.0067 8 6 1.4539 -2.4972 0.0124 9 7 1.2164 -2.9178 1.3954 10 6 0.5401 -4.0809 1.6508 11 1 0.1857 -4.6903 0.8326 12 6 0.3100 -4.4766 2.9613 13 7 0.7414 -3.7335 3.9584 14 14 -0.6119 -6.0634 3.3096 15 1 -0.9866 -6.7101 2.0265 16 1 0.2577 -6.9801 4.0899 17 1 -1.8392 -5.7619 4.0895 18 1 -0.3633 0.0045 1.0277 19 1 -0.3634 0.8877 -0.5177 20 1 -0.3634 -0.8922 -0.5099 21 1 1.6890 2.1423 -0.0004 22 1 4.1736 2.0592 -0.0098 23 1 5.3046 -0.1287 -0.0087 24 1 2.0410 -3.2574 -0.5028 25 1 0.4991 -2.3683 -0.4973 26 1 1.5343 -2.3703 2.1303 27 1 0.5810 -4.0102 4.8742 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070908791.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:24 Heat of formation + Delta-G solvation = 19.669638 kcal Electronic energy + Delta-G solvation = -11417.328993 eV Core-core repulsion = 9367.341061 eV Total energy + Delta-G solvation = -2049.987932 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21662 -36.71601 -34.56056 -33.86264 -31.96520 -28.52574 -27.41893 -24.96883 -23.33028 -22.30046 -19.38472 -17.65840 -17.28689 -16.66567 -15.86017 -15.56191 -15.10446 -14.65052 -14.26625 -13.89848 -13.59111 -13.47642 -13.21610 -12.96331 -12.77499 -12.18151 -11.99126 -11.86422 -10.99792 -10.61297 -10.27006 -9.71936 -9.04328 -7.96197 -5.26912 0.19338 0.42264 1.47610 1.49477 1.59862 2.54402 2.87681 3.35803 3.48524 3.87174 3.99323 4.11030 4.16317 4.21539 4.59045 4.70689 4.74475 4.85517 4.89617 4.96725 5.25446 5.29965 5.44470 5.47143 5.88873 6.23507 7.16679 7.30063 8.00015 8.27358 9.27954 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.060548 B = 0.008920 C = 0.008554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.335054 B = 3138.197805 C = 3272.508562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.131 4.131 3 C -0.082 4.082 4 C -0.163 4.163 5 C 0.071 3.929 6 N -0.511 5.511 7 C 0.099 3.901 8 C 0.197 3.803 9 N -0.732 5.732 10 C -0.245 4.245 11 H 0.081 0.919 12 C -0.075 4.075 13 N -0.973 5.973 14 Si 0.980 3.020 15 H -0.263 1.263 16 H -0.294 1.294 17 H -0.290 1.290 18 H 0.061 0.939 19 H 0.096 0.904 20 H 0.065 0.935 21 H 0.168 0.832 22 H 0.174 0.826 23 H 0.177 0.823 24 H 0.021 0.979 25 H 0.054 0.946 26 H 0.370 0.630 27 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 11.421 -9.138 14.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C -0.107 4.107 4 C -0.182 4.182 5 C -0.086 4.086 6 N -0.220 5.220 7 C -0.038 4.038 8 C 0.071 3.929 9 N -0.375 5.375 10 C -0.377 4.377 11 H 0.099 0.901 12 C -0.267 4.267 13 N -0.623 5.623 14 Si 0.809 3.191 15 H -0.187 1.187 16 H -0.222 1.222 17 H -0.217 1.217 18 H 0.080 0.920 19 H 0.114 0.886 20 H 0.084 0.916 21 H 0.186 0.814 22 H 0.191 0.809 23 H 0.194 0.806 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.201 0.799 27 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.418 10.440 -9.226 14.141 hybrid contribution -0.529 -0.085 0.802 0.965 sum 1.889 10.355 -8.423 13.481 Atomic orbital electron populations 1.20775 0.89299 1.03758 1.02500 1.21007 0.98636 0.93561 1.00189 1.21906 0.94681 0.98260 0.95896 1.22523 0.95374 1.00083 1.00250 1.23284 1.01385 0.87881 0.96094 1.67434 1.08509 1.33707 1.12374 1.21274 0.89895 0.95510 0.97149 1.19655 0.95820 0.90110 0.87333 1.42363 1.67859 1.25606 1.01625 1.19722 1.26802 0.98844 0.92283 0.90149 1.25638 1.03163 1.02604 0.95319 1.69863 1.53213 1.40869 0.98392 0.84976 0.77409 0.78783 0.77974 1.18736 1.22170 1.21669 0.92028 0.88564 0.91575 0.81430 0.80867 0.80638 0.96110 0.92822 0.79873 0.93950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.06 9.62 71.23 0.69 -2.38 15 2 C -0.13 -4.24 5.90 -19.77 -0.12 -4.36 15 3 C -0.08 -2.02 9.86 22.47 0.22 -1.80 15 4 C -0.16 -3.74 10.11 22.36 0.23 -3.51 15 5 C 0.07 2.08 11.18 84.69 0.95 3.02 15 6 N -0.51 -20.08 10.27 -183.88 -1.89 -21.96 15 7 C 0.10 3.93 6.15 42.54 0.26 4.19 15 8 C 0.20 8.92 6.15 85.63 0.53 9.44 15 9 N -0.73 -40.12 5.59 -347.18 -1.94 -42.06 15 10 C -0.25 -14.25 9.99 84.03 0.84 -13.41 15 11 H 0.08 4.44 7.83 -2.91 -0.02 4.41 15 12 C -0.08 -4.46 5.50 84.86 0.47 -3.99 15 13 N -0.97 -61.70 13.06 21.65 0.28 -61.41 15 14 Si 0.98 47.13 29.55 68.60 2.03 49.16 15 15 H -0.26 -11.80 7.11 99.48 0.71 -11.09 15 16 H -0.29 -14.20 7.11 99.48 0.71 -13.50 15 17 H -0.29 -13.74 7.11 99.48 0.71 -13.03 15 18 H 0.06 1.97 8.14 -2.38 -0.02 1.96 15 19 H 0.10 1.99 8.10 -2.39 -0.02 1.97 15 20 H 0.07 2.03 5.96 -2.39 -0.01 2.01 15 21 H 0.17 2.79 8.06 -2.91 -0.02 2.77 15 22 H 0.17 2.40 8.06 -2.91 -0.02 2.38 15 23 H 0.18 3.93 8.06 -2.91 -0.02 3.91 15 24 H 0.02 0.99 8.14 -2.38 -0.02 0.97 15 25 H 0.05 2.25 5.93 -2.39 -0.01 2.23 15 26 H 0.37 22.03 7.66 -92.71 -0.71 21.32 15 27 H 0.25 15.33 8.31 -92.71 -0.77 14.56 15 Total: -1.00 -71.21 238.50 3.00 -68.21 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.46 Total: 20.86 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 4.06 Total: -12.79 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -3.55 Total: -125.44 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -71.21 3.00 -68.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070908791.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.878 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds