Wall clock time and date at job start Mon Mar 30 2020 02:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48497 * 109.47387 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46961 * 120.00013 * 3 2 1 7 7 C 1.40120 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.46187 * 120.00082 * 359.97438 * 7 2 1 10 10 O 1.21745 * 119.99832 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00303 * 179.97438 * 9 7 2 12 12 C 1.39604 * 120.00310 * 185.26356 * 11 9 7 13 13 C 1.39383 * 120.88436 * 212.39284 * 12 11 9 14 14 N 1.32238 * 118.99677 * 179.72493 * 13 12 11 15 15 C 1.31818 * 120.90519 * 0.27306 * 14 13 12 16 16 N 1.31817 * 121.96079 * 0.02726 * 15 14 13 17 17 C 1.32238 * 120.90483 * 359.97438 * 16 15 14 18 18 H 0.96999 * 120.00507 * 359.97438 * 1 2 3 19 19 H 0.97008 * 119.99686 * 5.27125 * 11 9 7 20 20 H 1.07999 * 120.49943 * 0.02562 * 13 12 11 21 21 H 1.08003 * 119.01998 * 179.97438 * 15 14 13 22 22 H 1.08002 * 120.49810 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2762 -2.4795 -0.0005 10 8 0.0587 -2.4795 -0.0005 11 7 1.9500 -3.6466 -0.0016 12 6 1.2564 -4.8531 -0.1125 13 6 1.7235 -6.0071 0.5142 14 7 1.0340 -7.1285 0.3889 15 6 -0.0764 -7.1649 -0.3206 16 7 -0.5482 -6.0973 -0.9333 17 6 0.0817 -4.9370 -0.8579 18 1 -0.4851 0.8400 0.0004 19 1 2.9171 -3.6484 0.0748 20 1 2.6322 -5.9847 1.0975 21 1 -0.6153 -8.0972 -0.4030 22 1 -0.3110 -4.0664 -1.3622 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083339730.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:35 Heat of formation + Delta-G solvation = 6.395758 kcal Electronic energy + Delta-G solvation = -11326.696251 eV Core-core repulsion = 9074.873715 eV Total energy + Delta-G solvation = -2251.822536 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.059 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.45054 -37.73339 -33.99742 -33.11213 -32.60165 -29.68938 -26.53501 -24.07204 -23.32233 -20.26371 -18.10066 -17.05837 -16.45508 -16.12651 -15.46655 -14.40138 -13.93804 -13.19714 -12.98005 -12.77069 -12.65223 -11.55812 -11.20232 -10.92951 -10.76952 -10.46687 -10.26930 -10.05044 -9.06723 -8.74782 -8.00219 -7.46766 -6.48750 -4.97579 1.52543 1.64283 3.01796 3.07385 3.09371 3.86740 4.16694 4.31710 4.45123 4.70290 4.84682 5.16684 5.42622 5.61063 5.87906 6.47629 6.85806 7.15811 7.35258 7.50755 7.77003 7.96038 8.62982 8.70451 8.97668 10.18123 10.40976 Molecular weight = 193.06amu Principal moments of inertia in cm(-1) A = 0.095622 B = 0.009088 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.750228 B = 3080.136342 C = 3305.068871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.085 3.915 3 Si 0.916 3.084 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.075 0.925 9 C 0.538 3.462 10 O -0.560 6.560 11 N -0.686 5.686 12 C 0.098 3.902 13 C 0.080 3.920 14 N -0.504 5.504 15 C 0.228 3.772 16 N -0.502 5.502 17 C 0.131 3.869 18 H 0.275 0.725 19 H 0.398 0.602 20 H 0.160 0.840 21 H 0.185 0.815 22 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.722 -4.801 -0.417 6.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.569 4.569 8 H 0.093 0.907 9 C 0.346 3.654 10 O -0.442 6.442 11 N -0.329 5.329 12 C -0.007 4.007 13 C -0.090 4.090 14 N -0.218 5.218 15 C -0.061 4.061 16 N -0.216 5.216 17 C -0.039 4.039 18 H 0.086 0.914 19 H 0.232 0.768 20 H 0.177 0.823 21 H 0.202 0.798 22 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.182 -5.419 -0.495 6.304 hybrid contribution 1.393 1.574 0.232 2.115 sum 4.575 -3.846 -0.263 5.982 Atomic orbital electron populations 1.69957 1.07226 1.28286 1.32773 1.25772 0.94767 1.00688 0.92472 0.86276 0.79772 0.80231 0.79691 1.19006 1.20287 1.19047 1.20807 0.93916 0.88694 1.53508 0.90722 1.18510 0.87548 0.81986 0.77401 1.90657 1.13642 1.85765 1.54088 1.44179 1.09854 1.03597 1.75307 1.19809 0.96424 0.89145 0.95294 1.22933 1.00603 0.88047 0.97386 1.68146 1.08025 1.28369 1.17223 1.24518 0.91167 0.97115 0.93266 1.68338 1.32655 0.99668 1.20894 1.23564 0.91562 0.95355 0.93447 0.91398 0.76783 0.82262 0.79784 0.80387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.10 11.82 55.55 0.66 -20.45 14 2 C 0.09 2.20 5.50 -17.35 -0.10 2.10 14 3 Si 0.92 18.66 29.56 -169.99 -5.02 13.63 14 4 H -0.27 -5.26 7.11 56.52 0.40 -4.85 14 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 14 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 14 7 C -0.53 -13.78 9.54 -35.69 -0.34 -14.12 14 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 14 9 C 0.54 14.09 7.51 -13.07 -0.10 13.99 14 10 O -0.56 -16.71 12.72 5.15 0.07 -16.64 14 11 N -0.69 -14.29 5.35 -11.00 -0.06 -14.34 14 12 C 0.10 1.97 6.33 -83.47 -0.53 1.45 14 13 C 0.08 1.39 11.26 -16.95 -0.19 1.20 14 14 N -0.50 -8.85 10.43 -14.39 -0.15 -9.00 14 15 C 0.23 3.94 12.28 -92.11 -1.13 2.81 14 16 N -0.50 -9.94 10.43 -14.39 -0.15 -10.09 14 17 C 0.13 2.82 9.94 -16.95 -0.17 2.65 14 18 H 0.28 6.98 8.29 -40.82 -0.34 6.64 14 19 H 0.40 6.84 8.80 -40.82 -0.36 6.48 14 20 H 0.16 2.22 8.06 -52.49 -0.42 1.80 14 21 H 0.19 2.45 8.06 -52.48 -0.42 2.02 14 22 H 0.18 4.22 6.48 -52.49 -0.34 3.88 14 LS Contribution 211.52 15.07 3.19 3.19 Total: -1.00 -31.27 211.52 -5.12 -36.39 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -1.09 Total: 7.24 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -2.55 Total: 10.07 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.30 Total: -53.88 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.07 Total: -16.64 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 3.19 Total: 3.19 kcal Total: -31.27 -5.12 -36.39 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083339730.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.786 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds