Wall clock time and date at job start Mon Mar 30 2020 02:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86800 * 119.99736 * 2 1 4 4 H 1.48497 * 109.47387 * 240.00212 * 3 2 1 5 5 H 1.48502 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46961 * 120.00013 * 3 2 1 7 7 C 1.40120 * 120.00305 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00042 * 179.97438 * 7 2 1 9 9 C 1.46187 * 120.00082 * 359.97438 * 7 2 1 10 10 O 1.21745 * 119.99832 * 0.02562 * 9 7 2 11 11 N 1.34771 * 120.00303 * 179.97438 * 9 7 2 12 12 C 1.39604 * 120.00310 * 185.26356 * 11 9 7 13 13 C 1.39383 * 120.88436 * 212.39284 * 12 11 9 14 14 N 1.32238 * 118.99677 * 179.72493 * 13 12 11 15 15 C 1.31818 * 120.90519 * 0.27306 * 14 13 12 16 16 N 1.31817 * 121.96079 * 0.02726 * 15 14 13 17 17 C 1.32238 * 120.90483 * 359.97438 * 16 15 14 18 18 H 0.96999 * 120.00507 * 359.97438 * 1 2 3 19 19 H 0.97008 * 119.99686 * 5.27125 * 11 9 7 20 20 H 1.07999 * 120.49943 * 0.02562 * 13 12 11 21 21 H 1.08003 * 119.01998 * 179.97438 * 15 14 13 22 22 H 1.08002 * 120.49810 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0940 1.6966 -1.2125 5 1 1.2752 2.7465 0.0006 6 1 3.0940 1.6964 1.2125 7 6 2.0070 -1.2134 -0.0005 8 1 3.0870 -1.2134 -0.0010 9 6 1.2762 -2.4795 -0.0005 10 8 0.0587 -2.4795 -0.0005 11 7 1.9500 -3.6466 -0.0016 12 6 1.2564 -4.8531 -0.1125 13 6 1.7235 -6.0071 0.5142 14 7 1.0340 -7.1285 0.3889 15 6 -0.0764 -7.1649 -0.3206 16 7 -0.5482 -6.0973 -0.9333 17 6 0.0817 -4.9370 -0.8579 18 1 -0.4851 0.8400 0.0004 19 1 2.9171 -3.6484 0.0748 20 1 2.6322 -5.9847 1.0975 21 1 -0.6153 -8.0972 -0.4030 22 1 -0.3110 -4.0664 -1.3622 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083339730.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:34 Heat of formation + Delta-G solvation = -16.720562 kcal Electronic energy + Delta-G solvation = -11327.698650 eV Core-core repulsion = 9074.873715 eV Total energy + Delta-G solvation = -2252.824935 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.059 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.98254 -39.58178 -35.79234 -34.72867 -34.47025 -31.33833 -28.43619 -25.62041 -24.90048 -22.09862 -19.86141 -18.51174 -18.15634 -17.81330 -17.30905 -16.05671 -15.54310 -14.81112 -14.65089 -14.51116 -14.36380 -13.32309 -12.80124 -12.76502 -12.40936 -12.08630 -11.79999 -11.73316 -10.96321 -10.31228 -9.97748 -9.14868 -8.40817 -6.99170 0.03743 0.09423 1.41987 1.43708 1.56887 2.18812 2.32440 2.68254 2.89498 3.31844 3.39175 3.52747 3.66225 4.05537 4.48425 4.94710 5.23388 5.34715 5.68036 5.82651 6.08157 6.15835 6.74386 7.13818 7.21638 8.24763 8.51961 Molecular weight = 193.06amu Principal moments of inertia in cm(-1) A = 0.095622 B = 0.009088 C = 0.008470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 292.750228 B = 3080.136342 C = 3305.068871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.029 3.971 3 Si 1.002 2.998 4 H -0.253 1.253 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.558 4.558 8 H 0.100 0.900 9 C 0.526 3.474 10 O -0.608 6.608 11 N -0.674 5.674 12 C 0.074 3.926 13 C 0.108 3.892 14 N -0.504 5.504 15 C 0.238 3.762 16 N -0.518 5.518 17 C 0.110 3.890 18 H 0.279 0.721 19 H 0.416 0.584 20 H 0.201 0.799 21 H 0.227 0.773 22 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.665 -5.425 0.192 8.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.177 1.177 5 H -0.201 1.201 6 H -0.176 1.176 7 C -0.593 4.593 8 H 0.118 0.882 9 C 0.334 3.666 10 O -0.493 6.493 11 N -0.320 5.320 12 C -0.030 4.030 13 C -0.062 4.062 14 N -0.217 5.217 15 C -0.050 4.050 16 N -0.233 5.233 17 C -0.059 4.059 18 H 0.089 0.911 19 H 0.254 0.746 20 H 0.218 0.782 21 H 0.243 0.757 22 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 5.158 -6.095 0.103 7.986 hybrid contribution 0.767 1.564 0.048 1.743 sum 5.926 -4.531 0.151 7.461 Atomic orbital electron populations 1.70126 1.09623 1.29656 1.34497 1.27024 0.95539 1.05108 0.91088 0.84989 0.78144 0.74308 0.80463 1.17673 1.20149 1.17619 1.21382 0.95297 0.89082 1.53538 0.88218 1.18841 0.87194 0.83703 0.76888 1.90623 1.15717 1.86911 1.56092 1.43620 1.10552 1.02716 1.75076 1.19892 0.96564 0.89790 0.96704 1.23519 1.00919 0.86438 0.95349 1.68333 1.08139 1.27983 1.17247 1.25397 0.90846 0.97577 0.91181 1.68337 1.33188 0.99760 1.21977 1.23170 0.92859 0.95272 0.94620 0.91098 0.74637 0.78217 0.75659 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -46.73 11.82 21.85 0.26 -46.47 14 2 C 0.03 1.52 5.50 85.33 0.47 1.99 14 3 Si 1.00 37.79 29.56 68.60 2.03 39.82 14 4 H -0.25 -8.95 7.11 99.48 0.71 -8.24 14 5 H -0.28 -10.24 7.11 99.48 0.71 -9.53 14 6 H -0.25 -8.90 7.11 99.48 0.71 -8.20 14 7 C -0.56 -28.84 9.54 24.79 0.24 -28.61 14 8 H 0.10 4.46 7.85 -2.91 -0.02 4.44 14 9 C 0.53 28.18 7.51 86.31 0.65 28.83 14 10 O -0.61 -37.97 12.72 -4.49 -0.06 -38.02 14 11 N -0.67 -27.92 5.35 -306.92 -1.64 -29.56 14 12 C 0.07 2.94 6.33 38.45 0.24 3.18 14 13 C 0.11 3.44 11.26 84.91 0.96 4.40 14 14 N -0.50 -16.06 10.43 -199.45 -2.08 -18.14 14 15 C 0.24 7.62 12.28 180.87 2.22 9.84 14 16 N -0.52 -20.36 10.43 -199.45 -2.08 -22.44 14 17 C 0.11 4.84 9.94 84.91 0.84 5.68 14 18 H 0.28 14.62 8.29 -92.71 -0.77 13.86 14 19 H 0.42 13.69 8.80 -92.70 -0.82 12.87 14 20 H 0.20 4.66 8.06 -2.91 -0.02 4.64 14 21 H 0.23 5.13 8.06 -2.91 -0.02 5.10 14 22 H 0.14 7.31 6.48 -2.91 -0.02 7.29 14 Total: -1.00 -69.76 211.52 2.49 -67.27 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.45 Total: 22.22 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 5.62 Total: 25.32 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -5.54 Total: -116.61 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.06 Total: -38.02 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -69.76 2.49 -67.27 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083339730.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.550 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds