Wall clock time and date at job start Mon Mar 30 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46944 * 2 1 4 4 C 1.50699 * 109.47013 * 239.99897 * 2 1 3 5 5 H 1.07998 * 120.00050 * 268.49949 * 4 2 1 6 6 C 1.37873 * 120.00007 * 88.49762 * 4 2 1 7 7 N 1.31516 * 120.00208 * 172.92887 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 352.92846 * 6 4 2 9 9 H 1.48498 * 109.47135 * 86.79340 * 8 6 4 10 10 H 1.48498 * 109.47093 * 206.79071 * 8 6 4 11 11 H 1.48500 * 109.47339 * 326.79012 * 8 6 4 12 12 C 1.50701 * 109.46915 * 119.99640 * 2 1 3 13 13 C 1.38648 * 120.78599 * 89.72141 * 12 2 1 14 14 C 1.38208 * 119.16398 * 180.29227 * 13 12 2 15 15 N 1.31868 * 120.75894 * 359.97438 * 14 13 12 16 16 C 1.31870 * 121.73058 * 0.02562 * 15 14 13 17 17 C 1.38203 * 120.76368 * 0.02562 * 16 15 14 18 18 H 1.09004 * 109.47177 * 305.86970 * 1 2 3 19 19 H 1.08995 * 109.47404 * 65.86926 * 1 2 3 20 20 H 1.08997 * 109.47315 * 185.87271 * 1 2 3 21 21 H 1.00902 * 111.00021 * 56.04324 * 3 2 1 22 22 H 1.00902 * 110.99772 * 179.97438 * 3 2 1 23 23 H 0.96997 * 119.99640 * 179.97438 * 7 6 4 24 24 H 1.08003 * 120.41830 * 0.25233 * 13 12 2 25 25 H 1.08001 * 119.61905 * 179.97438 * 14 13 12 26 26 H 1.07996 * 119.62018 * 180.02562 * 16 15 14 27 27 H 1.07993 * 120.42132 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2354 -1.7706 -1.1968 6 6 2.2326 -0.0069 -2.3992 7 7 2.8005 -0.5931 -3.4305 8 14 1.6973 1.7788 -2.5178 9 1 2.7850 2.6561 -2.0154 10 1 1.4050 2.1148 -3.9344 11 1 0.4763 1.9851 -1.6981 12 6 2.0323 -0.7103 1.2305 13 6 2.2634 -2.0774 1.2162 14 6 2.7182 -2.6956 2.3655 15 7 2.9325 -2.0007 3.4656 16 6 2.7236 -0.6996 3.5157 17 6 2.2680 -0.0135 2.4058 18 1 -0.3634 0.6022 0.8328 19 1 -0.3634 0.4201 -0.9378 20 1 -0.3634 -1.0222 0.1051 21 1 1.6441 1.9013 0.7813 22 1 3.0283 1.4119 0.0004 23 1 2.9410 -0.0982 -4.2528 24 1 2.0895 -2.6519 0.3183 25 1 2.9002 -3.7602 2.3627 26 1 2.9108 -0.1639 4.4345 27 1 2.0984 1.0520 2.4531 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329756.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:23 Heat of formation + Delta-G solvation = 36.723541 kcal Electronic energy + Delta-G solvation = -11935.606601 eV Core-core repulsion = 9886.358182 eV Total energy + Delta-G solvation = -2049.248419 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.77132 -36.35844 -32.08994 -30.99400 -30.53070 -28.26746 -25.34992 -23.25697 -22.68269 -19.62837 -16.86088 -16.43442 -15.50014 -15.11206 -14.82051 -13.99961 -13.61926 -13.27320 -13.18428 -12.42402 -12.10765 -11.47764 -11.27078 -11.02071 -10.59828 -10.37749 -9.88261 -9.46049 -8.94191 -8.86878 -8.63557 -8.43993 -7.59977 -6.05069 -4.18724 1.62778 1.87298 3.66052 3.69866 3.92927 4.34052 4.71449 4.86160 5.19471 5.22817 5.41440 5.51586 5.64519 5.77786 6.09805 6.29586 6.30306 6.43987 6.56788 6.69836 6.88103 7.09592 7.26853 7.54627 7.83002 8.10933 8.41159 8.49998 8.86282 9.55940 11.01568 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.053656 B = 0.013511 C = 0.012117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.717277 B = 2071.880212 C = 2310.254596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.242 3.758 3 N -0.823 5.823 4 C -0.530 4.530 5 H 0.080 0.920 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.988 3.012 9 H -0.303 1.303 10 H -0.349 1.349 11 H -0.278 1.278 12 C -0.026 4.026 13 C -0.148 4.148 14 C 0.084 3.916 15 N -0.505 5.505 16 C 0.087 3.913 17 C -0.193 4.193 18 H 0.024 0.976 19 H 0.065 0.935 20 H 0.049 0.951 21 H 0.322 0.678 22 H 0.344 0.656 23 H 0.264 0.736 24 H 0.144 0.856 25 H 0.147 0.853 26 H 0.144 0.856 27 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 1.585 9.579 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.151 3.849 3 N -0.355 5.355 4 C -0.567 4.567 5 H 0.098 0.902 6 C -0.133 4.133 7 N -0.532 5.532 8 Si 0.829 3.171 9 H -0.232 1.232 10 H -0.283 1.283 11 H -0.205 1.205 12 C -0.036 4.036 13 C -0.168 4.168 14 C -0.072 4.072 15 N -0.215 5.215 16 C -0.070 4.070 17 C -0.213 4.213 18 H 0.043 0.957 19 H 0.084 0.916 20 H 0.068 0.932 21 H 0.136 0.864 22 H 0.158 0.842 23 H 0.073 0.927 24 H 0.161 0.839 25 H 0.165 0.835 26 H 0.161 0.839 27 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.036 1.205 9.457 9.748 hybrid contribution 0.032 1.091 0.004 1.092 sum -2.004 2.297 9.461 9.940 Atomic orbital electron populations 1.22023 0.95925 1.00112 1.00492 1.17995 0.92233 0.83865 0.90826 1.58793 1.14277 1.15356 1.47102 1.20753 1.47179 0.96356 0.92445 0.90225 1.25220 0.92710 1.00555 0.94816 1.69981 1.40883 1.38459 1.03868 0.84895 0.79522 0.81973 0.70702 1.23180 1.28347 1.20478 1.21709 0.91427 0.94671 0.95756 1.22284 0.99292 0.95790 0.99434 1.22713 0.96034 0.99773 0.88705 1.67567 1.16727 1.08417 1.28753 1.22491 0.96341 0.90512 0.97696 1.21951 1.04056 1.01020 0.94312 0.95714 0.91647 0.93154 0.86360 0.84234 0.92670 0.83877 0.83531 0.83855 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.35 37.16 0.31 -2.26 15 2 C 0.24 5.18 0.67 -133.90 -0.09 5.09 15 3 N -0.82 -16.42 3.67 -1.14 0.00 -16.42 15 4 C -0.53 -13.90 8.34 -34.44 -0.29 -14.18 15 5 H 0.08 2.24 6.02 -52.49 -0.32 1.92 15 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 15 7 N -0.90 -26.91 13.96 55.43 0.77 -26.14 15 8 Si 0.99 24.51 23.98 -169.99 -4.08 20.43 15 9 H -0.30 -7.40 7.10 56.52 0.40 -7.00 15 10 H -0.35 -9.14 7.11 56.52 0.40 -8.73 15 11 H -0.28 -6.59 5.47 56.52 0.31 -6.28 15 12 C -0.03 -0.50 4.80 -104.32 -0.50 -1.00 15 13 C -0.15 -2.82 9.18 -39.44 -0.36 -3.19 15 14 C 0.08 1.44 11.18 -17.55 -0.20 1.24 15 15 N -0.50 -8.85 10.36 -13.25 -0.14 -8.99 15 16 C 0.09 1.39 11.18 -17.55 -0.20 1.19 15 17 C -0.19 -3.21 9.37 -39.44 -0.37 -3.58 15 18 H 0.02 0.43 8.14 -51.93 -0.42 0.01 15 19 H 0.06 1.42 6.05 -51.93 -0.31 1.10 15 20 H 0.05 0.98 8.14 -51.93 -0.42 0.56 15 21 H 0.32 5.36 7.46 -39.29 -0.29 5.07 15 22 H 0.34 6.89 8.72 -39.29 -0.34 6.54 15 23 H 0.26 7.56 8.31 -40.82 -0.34 7.23 15 24 H 0.14 2.84 6.19 -52.48 -0.32 2.51 15 25 H 0.15 2.09 8.06 -52.49 -0.42 1.67 15 26 H 0.14 1.82 8.06 -52.49 -0.42 1.39 15 27 H 0.12 1.74 6.61 -52.49 -0.35 1.39 15 LS Contribution 221.91 15.07 3.34 3.34 Total: -1.00 -30.44 221.91 -4.74 -35.18 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -2.86 Total: 7.37 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -1.79 Total: -14.79 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.63 Total: -51.54 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -4.08 Total: 20.43 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -30.44 -4.74 -35.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329756.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.908 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds