Wall clock time and date at job start Mon Mar 30 2020 02:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46898 * 109.46944 * 2 1 4 4 C 1.50699 * 109.47013 * 239.99897 * 2 1 3 5 5 H 1.07998 * 120.00050 * 268.49949 * 4 2 1 6 6 C 1.37873 * 120.00007 * 88.49762 * 4 2 1 7 7 N 1.31516 * 120.00208 * 172.92887 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 352.92846 * 6 4 2 9 9 H 1.48498 * 109.47135 * 86.79340 * 8 6 4 10 10 H 1.48498 * 109.47093 * 206.79071 * 8 6 4 11 11 H 1.48500 * 109.47339 * 326.79012 * 8 6 4 12 12 C 1.50701 * 109.46915 * 119.99640 * 2 1 3 13 13 C 1.38648 * 120.78599 * 89.72141 * 12 2 1 14 14 C 1.38208 * 119.16398 * 180.29227 * 13 12 2 15 15 N 1.31868 * 120.75894 * 359.97438 * 14 13 12 16 16 C 1.31870 * 121.73058 * 0.02562 * 15 14 13 17 17 C 1.38203 * 120.76368 * 0.02562 * 16 15 14 18 18 H 1.09004 * 109.47177 * 305.86970 * 1 2 3 19 19 H 1.08995 * 109.47404 * 65.86926 * 1 2 3 20 20 H 1.08997 * 109.47315 * 185.87271 * 1 2 3 21 21 H 1.00902 * 111.00021 * 56.04324 * 3 2 1 22 22 H 1.00902 * 110.99772 * 179.97438 * 3 2 1 23 23 H 0.96997 * 119.99640 * 179.97438 * 7 6 4 24 24 H 1.08003 * 120.41830 * 0.25233 * 13 12 2 25 25 H 1.08001 * 119.61905 * 179.97438 * 14 13 12 26 26 H 1.07996 * 119.62018 * 180.02562 * 16 15 14 27 27 H 1.07993 * 120.42132 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.2354 -1.7706 -1.1968 6 6 2.2326 -0.0069 -2.3992 7 7 2.8005 -0.5931 -3.4305 8 14 1.6973 1.7788 -2.5178 9 1 2.7850 2.6561 -2.0154 10 1 1.4050 2.1148 -3.9344 11 1 0.4763 1.9851 -1.6981 12 6 2.0323 -0.7103 1.2305 13 6 2.2634 -2.0774 1.2162 14 6 2.7182 -2.6956 2.3655 15 7 2.9325 -2.0007 3.4656 16 6 2.7236 -0.6996 3.5157 17 6 2.2680 -0.0135 2.4058 18 1 -0.3634 0.6022 0.8328 19 1 -0.3634 0.4201 -0.9378 20 1 -0.3634 -1.0222 0.1051 21 1 1.6441 1.9013 0.7813 22 1 3.0283 1.4119 0.0004 23 1 2.9410 -0.0982 -4.2528 24 1 2.0895 -2.6519 0.3183 25 1 2.9002 -3.7602 2.3627 26 1 2.9108 -0.1639 4.4345 27 1 2.0984 1.0520 2.4531 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329756.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:23 Heat of formation + Delta-G solvation = 14.302928 kcal Electronic energy + Delta-G solvation = -11936.578832 eV Core-core repulsion = 9886.358182 eV Total energy + Delta-G solvation = -2050.220650 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.16710 -37.98010 -34.13118 -32.42720 -31.94072 -29.89669 -27.29266 -24.75691 -24.07437 -21.28076 -18.71472 -17.99939 -17.03735 -16.61080 -16.40632 -15.73174 -15.15254 -14.73343 -14.56679 -14.18311 -13.95866 -13.18828 -12.75759 -12.63754 -12.40995 -12.29841 -11.77593 -11.25788 -10.64290 -10.38373 -10.24926 -9.97880 -9.27074 -8.19784 -6.34131 0.30335 0.45928 1.66995 1.70456 1.96149 2.66332 2.97552 3.17460 3.65145 3.75992 3.95941 4.10682 4.32062 4.38869 4.67168 4.81695 4.82778 4.96766 4.99136 5.20446 5.34426 5.52916 5.75232 5.88850 6.04903 6.38389 6.68146 6.85406 7.09078 7.43677 8.90353 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.053656 B = 0.013511 C = 0.012117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.717277 B = 2071.880212 C = 2310.254596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.244 3.756 3 N -0.825 5.825 4 C -0.521 4.521 5 H 0.046 0.954 6 C 0.016 3.984 7 N -0.950 5.950 8 Si 1.046 2.954 9 H -0.294 1.294 10 H -0.374 1.374 11 H -0.258 1.258 12 C -0.045 4.045 13 C -0.171 4.171 14 C 0.086 3.914 15 N -0.515 5.515 16 C 0.091 3.909 17 C -0.185 4.185 18 H 0.057 0.943 19 H 0.048 0.952 20 H 0.048 0.952 21 H 0.348 0.652 22 H 0.345 0.655 23 H 0.261 0.739 24 H 0.121 0.879 25 H 0.170 0.830 26 H 0.184 0.816 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 3.191 12.336 12.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.152 3.848 3 N -0.360 5.360 4 C -0.559 4.559 5 H 0.064 0.936 6 C -0.182 4.182 7 N -0.589 5.589 8 Si 0.886 3.114 9 H -0.222 1.222 10 H -0.312 1.312 11 H -0.184 1.184 12 C -0.055 4.055 13 C -0.191 4.191 14 C -0.069 4.069 15 N -0.225 5.225 16 C -0.066 4.066 17 C -0.205 4.205 18 H 0.076 0.924 19 H 0.067 0.933 20 H 0.067 0.933 21 H 0.165 0.835 22 H 0.159 0.841 23 H 0.069 0.931 24 H 0.139 0.861 25 H 0.187 0.813 26 H 0.201 0.799 27 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.494 2.813 12.269 12.832 hybrid contribution 0.183 0.501 -0.737 0.909 sum -2.312 3.314 11.532 12.220 Atomic orbital electron populations 1.21919 0.94787 1.00666 1.00909 1.17754 0.92908 0.84479 0.89611 1.58472 1.14546 1.14516 1.48456 1.21089 1.45062 0.95392 0.94365 0.93570 1.26038 0.93153 1.04323 0.94687 1.70118 1.43997 1.40080 1.04726 0.83908 0.80103 0.77849 0.69505 1.22193 1.31160 1.18371 1.21534 0.93005 0.94809 0.96178 1.22228 1.01126 0.96180 0.99599 1.22988 0.95076 1.00941 0.87939 1.67678 1.16930 1.09439 1.28480 1.23152 0.94457 0.90060 0.98888 1.22187 1.02880 1.02326 0.93099 0.92409 0.93326 0.93329 0.83525 0.84124 0.93086 0.86090 0.81301 0.79927 0.82990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 8.35 71.98 0.60 -4.15 15 2 C 0.24 10.04 0.67 2.04 0.00 10.04 15 3 N -0.83 -30.23 3.67 -157.51 -0.58 -30.81 15 4 C -0.52 -27.75 8.34 25.60 0.21 -27.54 15 5 H 0.05 2.72 6.02 -2.91 -0.02 2.70 15 6 C 0.02 0.92 5.45 84.65 0.46 1.38 15 7 N -0.95 -59.19 13.96 21.45 0.30 -58.89 15 8 Si 1.05 50.36 23.98 68.60 1.64 52.00 15 9 H -0.29 -13.50 7.10 99.48 0.71 -12.79 15 10 H -0.37 -19.46 7.11 99.48 0.71 -18.76 15 11 H -0.26 -11.37 5.47 99.48 0.54 -10.82 15 12 C -0.05 -1.66 4.80 -19.67 -0.09 -1.76 15 13 C -0.17 -6.46 9.18 22.36 0.21 -6.26 15 14 C 0.09 2.82 11.18 84.68 0.95 3.77 15 15 N -0.52 -16.46 10.36 -195.84 -2.03 -18.49 15 16 C 0.09 2.51 11.18 84.68 0.95 3.46 15 17 C -0.19 -5.39 9.37 22.36 0.21 -5.18 15 18 H 0.06 1.81 8.14 -2.38 -0.02 1.79 15 19 H 0.05 2.00 6.05 -2.39 -0.01 1.98 15 20 H 0.05 1.83 8.14 -2.39 -0.02 1.81 15 21 H 0.35 9.84 7.46 -89.69 -0.67 9.18 15 22 H 0.35 12.80 8.72 -89.69 -0.78 12.02 15 23 H 0.26 15.57 8.31 -92.71 -0.77 14.80 15 24 H 0.12 5.03 6.19 -2.91 -0.02 5.01 15 25 H 0.17 4.57 8.06 -2.91 -0.02 4.55 15 26 H 0.18 3.56 8.06 -2.91 -0.02 3.54 15 27 H 0.15 3.45 6.61 -2.91 -0.02 3.43 15 Total: -1.00 -66.39 221.91 2.41 -63.98 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.42 Total: 18.44 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 3.49 Total: -26.24 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -2.31 Total: -108.19 kcal Atomic # 14 Polarization: 50.36 SS G_CDS: 1.64 Total: 52.00 kcal Total: -66.39 2.41 -63.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329756.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.287 kcal (2) G-P(sol) polarization free energy of solvation -66.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds