Wall clock time and date at job start Mon Mar 30 2020 02:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47290 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99828 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99400 * 2 1 3 13 13 C 1.38672 * 120.41174 * 90.00384 * 12 2 1 14 14 C 1.38631 * 118.41510 * 180.02562 * 13 12 2 15 15 C 1.38224 * 119.16601 * 359.97438 * 14 13 12 16 16 N 1.31857 * 120.75985 * 0.02562 * 15 14 13 17 17 C 1.31886 * 121.72564 * 359.70231 * 16 15 14 18 18 H 1.09001 * 109.47094 * 300.00380 * 1 2 3 19 19 H 1.09003 * 109.46851 * 60.00406 * 1 2 3 20 20 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 21 21 H 1.00903 * 111.00048 * 179.97438 * 3 2 1 22 22 H 1.00904 * 110.99882 * 303.95026 * 3 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.07994 * 120.79620 * 359.97438 * 13 12 2 25 25 H 1.08009 * 120.41704 * 180.02562 * 14 13 12 26 26 H 1.07998 * 119.62263 * 179.97438 * 15 14 13 27 27 H 1.08004 * 119.61644 * 180.31523 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1120 4.0080 9 1 3.8178 -1.1114 4.0023 10 1 1.8417 -0.4090 5.2204 11 1 1.8384 -2.5123 4.0139 12 6 2.0323 -0.7105 -1.2304 13 6 2.2664 -0.0059 -2.4015 14 6 2.7277 -0.7010 -3.5087 15 6 2.9381 -2.0635 -3.4091 16 7 2.7046 -2.7010 -2.2787 17 6 2.2705 -2.0714 -1.2042 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 3.0283 1.4119 0.0004 22 1 1.6442 1.9012 -0.7814 23 1 0.7164 1.1670 3.4844 24 1 2.0927 1.0589 -2.4503 25 1 2.9211 -0.1843 -4.4372 26 1 3.2969 -2.6124 -4.2671 27 1 2.0953 -2.6265 -0.2945 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329758.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:15 Heat of formation + Delta-G solvation = 38.358527 kcal Electronic energy + Delta-G solvation = -11871.820559 eV Core-core repulsion = 9822.643038 eV Total energy + Delta-G solvation = -2049.177521 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60797 -35.75401 -32.11872 -31.22323 -29.63609 -27.46491 -25.32900 -22.94454 -22.60842 -19.38725 -16.73075 -16.46732 -15.22064 -14.79088 -14.27296 -13.98092 -13.30242 -13.14153 -12.75985 -12.33150 -11.80390 -11.21218 -10.85556 -10.83108 -10.54391 -10.31570 -9.90858 -9.28002 -9.12639 -8.77769 -8.43491 -8.14493 -7.15910 -5.89534 -4.08076 1.78327 1.91026 3.33446 3.38204 3.41382 4.41715 4.49785 5.05580 5.30724 5.32149 5.54544 5.71624 5.83094 6.06565 6.29127 6.44791 6.66826 6.81202 6.95396 7.03807 7.18000 7.38360 7.77271 7.94572 8.24436 8.55463 8.63271 8.91932 9.07223 9.61654 11.10490 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.012740 C = 0.011084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.159839 B = 2197.339398 C = 2525.453869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.280 3.720 3 N -0.804 5.804 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.088 3.912 7 N -0.843 5.843 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 C -0.118 4.118 13 C -0.099 4.099 14 C -0.179 4.179 15 C 0.064 3.936 16 N -0.494 5.494 17 C 0.106 3.894 18 H 0.096 0.904 19 H 0.006 0.994 20 H 0.032 0.968 21 H 0.320 0.680 22 H 0.296 0.704 23 H 0.256 0.744 24 H 0.123 0.877 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 -0.994 -7.558 7.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.188 3.812 3 N -0.330 5.330 4 C -0.572 4.572 5 H 0.076 0.924 6 C -0.119 4.119 7 N -0.477 5.477 8 Si 0.711 3.289 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 C -0.123 4.123 13 C -0.126 4.126 14 C -0.199 4.199 15 C -0.093 4.093 16 N -0.203 5.203 17 C -0.051 4.051 18 H 0.114 0.886 19 H 0.025 0.975 20 H 0.051 0.949 21 H 0.132 0.868 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.141 0.859 25 H 0.139 0.861 26 H 0.159 0.841 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.166 -1.671 -6.663 6.967 hybrid contribution 0.730 0.297 -0.243 0.825 sum 1.896 -1.374 -6.905 7.292 Atomic orbital electron populations 1.21739 0.96001 0.99290 1.00845 1.17473 0.92164 0.84311 0.87297 1.59160 1.11595 1.14735 1.47556 1.20866 1.34326 1.12381 0.89604 0.92395 1.24897 0.94301 0.94262 0.98467 1.70009 1.34072 1.20978 1.22619 0.86824 0.79347 0.79872 0.82818 1.20384 1.21333 1.20252 1.22750 0.95334 0.96206 0.97970 1.21461 0.98093 1.00193 0.92834 1.21955 1.02674 0.96093 0.99181 1.22495 0.98990 0.91920 0.95915 1.67685 1.11852 1.40880 0.99850 1.22988 0.93804 0.92563 0.95754 0.88554 0.97514 0.94932 0.86780 0.89208 0.93372 0.85950 0.86081 0.84079 0.81923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 8.49 37.16 0.32 -2.51 15 2 C 0.28 6.50 0.69 -133.91 -0.09 6.41 15 3 N -0.80 -17.98 7.81 -1.14 -0.01 -17.99 15 4 C -0.53 -13.78 7.56 -34.44 -0.26 -14.04 15 5 H 0.06 1.49 6.04 -52.49 -0.32 1.17 15 6 C 0.09 2.32 5.23 -17.82 -0.09 2.23 15 7 N -0.84 -23.02 10.81 55.43 0.60 -22.43 15 8 Si 0.88 20.63 29.54 -169.99 -5.02 15.61 15 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 15 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 12 C -0.12 -2.47 4.80 -104.48 -0.50 -2.97 15 13 C -0.10 -1.79 9.40 -39.28 -0.37 -2.16 15 14 C -0.18 -2.84 10.11 -39.44 -0.40 -3.24 15 15 C 0.06 1.07 11.18 -17.55 -0.20 0.87 15 16 N -0.49 -9.73 10.36 -13.25 -0.14 -9.87 15 17 C 0.11 2.23 10.06 -17.55 -0.18 2.05 15 18 H 0.10 2.50 6.08 -51.93 -0.32 2.18 15 19 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 15 20 H 0.03 0.74 8.14 -51.93 -0.42 0.31 15 21 H 0.32 7.03 8.98 -39.29 -0.35 6.67 15 22 H 0.30 5.88 7.43 -39.29 -0.29 5.59 15 23 H 0.26 6.80 8.31 -40.82 -0.34 6.46 15 24 H 0.12 1.99 6.60 -52.49 -0.35 1.64 15 25 H 0.12 1.51 8.06 -52.48 -0.42 1.08 15 26 H 0.14 1.87 8.06 -52.49 -0.42 1.45 15 27 H 0.16 3.49 6.42 -52.48 -0.34 3.16 15 LS Contribution 229.63 15.07 3.46 3.46 Total: -1.00 -27.96 229.63 -5.67 -33.63 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -2.79 Total: 10.96 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.77 Total: -13.37 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: 0.45 Total: -50.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -27.96 -5.67 -33.63 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329758.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.987 kcal (2) G-P(sol) polarization free energy of solvation -27.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds