Wall clock time and date at job start Mon Mar 30 2020 02:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46899 * 109.47290 * 2 1 4 4 C 1.50702 * 109.46842 * 119.99828 * 2 1 3 5 5 H 1.08002 * 120.00299 * 120.00437 * 4 2 1 6 6 C 1.37884 * 119.99942 * 299.71996 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47211 * 239.99400 * 2 1 3 13 13 C 1.38672 * 120.41174 * 90.00384 * 12 2 1 14 14 C 1.38631 * 118.41510 * 180.02562 * 13 12 2 15 15 C 1.38224 * 119.16601 * 359.97438 * 14 13 12 16 16 N 1.31857 * 120.75985 * 0.02562 * 15 14 13 17 17 C 1.31886 * 121.72564 * 359.70231 * 16 15 14 18 18 H 1.09001 * 109.47094 * 300.00380 * 1 2 3 19 19 H 1.09003 * 109.46851 * 60.00406 * 1 2 3 20 20 H 1.09003 * 109.47532 * 180.02562 * 1 2 3 21 21 H 1.00903 * 111.00048 * 179.97438 * 3 2 1 22 22 H 1.00904 * 110.99882 * 303.95026 * 3 2 1 23 23 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 24 24 H 1.07994 * 120.79620 * 359.97438 * 13 12 2 25 25 H 1.08009 * 120.41704 * 180.02562 * 14 13 12 26 26 H 1.07998 * 119.62263 * 179.97438 * 15 14 13 27 27 H 1.08004 * 119.61644 * 180.31523 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.7039 -0.2359 2.4828 7 7 0.9477 0.8334 2.6033 8 14 2.3328 -1.1120 4.0080 9 1 3.8178 -1.1114 4.0023 10 1 1.8417 -0.4090 5.2204 11 1 1.8384 -2.5123 4.0139 12 6 2.0323 -0.7105 -1.2304 13 6 2.2664 -0.0059 -2.4015 14 6 2.7277 -0.7010 -3.5087 15 6 2.9381 -2.0635 -3.4091 16 7 2.7046 -2.7010 -2.2787 17 6 2.2705 -2.0714 -1.2042 18 1 -0.3633 0.5139 0.8900 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0277 0.0005 21 1 3.0283 1.4119 0.0004 22 1 1.6442 1.9012 -0.7814 23 1 0.7164 1.1670 3.4844 24 1 2.0927 1.0589 -2.4503 25 1 2.9211 -0.1843 -4.4372 26 1 3.2969 -2.6124 -4.2671 27 1 2.0953 -2.6265 -0.2945 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329758.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:15 Heat of formation + Delta-G solvation = 19.198241 kcal Electronic energy + Delta-G solvation = -11872.651411 eV Core-core repulsion = 9822.643038 eV Total energy + Delta-G solvation = -2050.008373 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.07018 -37.47937 -33.93648 -32.73852 -31.21051 -29.25679 -27.27592 -24.48366 -24.07714 -21.12321 -18.37029 -18.09473 -16.74789 -16.59899 -15.94706 -15.69877 -14.81614 -14.64102 -14.48671 -13.81092 -13.53783 -12.97574 -12.70587 -12.68445 -12.35384 -12.15937 -11.75776 -11.03389 -10.60946 -10.42513 -10.28507 -9.66867 -8.88110 -7.89124 -6.11694 0.37760 0.48714 1.45952 1.47615 1.53222 2.49522 3.03586 3.31153 3.71211 4.07258 4.19231 4.22487 4.36244 4.47509 4.79402 4.95469 5.06698 5.15686 5.30758 5.36557 5.48608 5.75922 5.88495 6.07325 6.36201 6.70557 7.09239 7.19198 7.31720 7.60289 9.08718 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049796 B = 0.012740 C = 0.011084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 562.159839 B = 2197.339398 C = 2525.453869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.277 3.723 3 N -0.813 5.813 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.046 3.954 7 N -0.866 5.866 8 Si 0.936 3.064 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.275 1.275 12 C -0.140 4.140 13 C -0.100 4.100 14 C -0.164 4.164 15 C 0.064 3.936 16 N -0.513 5.513 17 C 0.084 3.916 18 H 0.068 0.932 19 H 0.024 0.976 20 H 0.025 0.975 21 H 0.322 0.678 22 H 0.312 0.688 23 H 0.253 0.747 24 H 0.140 0.860 25 H 0.167 0.833 26 H 0.182 0.818 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -0.865 -9.504 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.185 3.815 3 N -0.341 5.341 4 C -0.581 4.581 5 H 0.068 0.932 6 C -0.159 4.159 7 N -0.502 5.502 8 Si 0.763 3.237 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.201 1.201 12 C -0.144 4.144 13 C -0.126 4.126 14 C -0.183 4.183 15 C -0.093 4.093 16 N -0.222 5.222 17 C -0.072 4.072 18 H 0.087 0.913 19 H 0.043 0.957 20 H 0.044 0.956 21 H 0.133 0.867 22 H 0.125 0.875 23 H 0.062 0.938 24 H 0.158 0.842 25 H 0.185 0.815 26 H 0.199 0.801 27 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.912 -1.550 -8.604 8.949 hybrid contribution 0.526 0.233 0.211 0.613 sum 2.438 -1.316 -8.393 8.838 Atomic orbital electron populations 1.21596 0.96620 0.98615 1.00266 1.17285 0.91734 0.84762 0.87694 1.58986 1.11735 1.14644 1.48706 1.21185 1.33682 1.12246 0.91023 0.93219 1.25477 0.94725 0.94953 1.00702 1.70130 1.35205 1.22130 1.22697 0.85996 0.78572 0.78947 0.80179 1.20508 1.21227 1.20086 1.22451 0.97472 0.96213 0.98314 1.21708 0.97441 1.01082 0.92375 1.22405 1.00126 0.95749 1.00004 1.23242 0.97337 0.92903 0.95806 1.67672 1.12463 1.41553 1.00493 1.22715 0.95680 0.92760 0.96018 0.91274 0.95729 0.95624 0.86664 0.87516 0.93771 0.84208 0.81538 0.80144 0.84017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.31 8.49 71.98 0.61 -4.69 15 2 C 0.28 12.90 0.69 2.03 0.00 12.90 15 3 N -0.81 -35.86 7.81 -157.52 -1.23 -37.09 15 4 C -0.54 -28.49 7.56 25.60 0.19 -28.30 15 5 H 0.05 2.63 6.04 -2.91 -0.02 2.61 15 6 C 0.05 2.44 5.23 84.66 0.44 2.88 15 7 N -0.87 -47.99 10.81 21.45 0.23 -47.76 15 8 Si 0.94 42.98 29.54 68.60 2.03 45.01 15 9 H -0.28 -12.77 7.11 99.48 0.71 -12.07 15 10 H -0.29 -13.01 7.11 99.48 0.71 -12.30 15 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 15 12 C -0.14 -5.74 4.80 -19.78 -0.09 -5.84 15 13 C -0.10 -3.29 9.40 22.47 0.21 -3.08 15 14 C -0.16 -4.45 10.11 22.36 0.23 -4.22 15 15 C 0.06 1.91 11.18 84.69 0.95 2.86 15 16 N -0.51 -19.41 10.36 -195.85 -2.03 -21.44 15 17 C 0.08 3.54 10.06 84.67 0.85 4.39 15 18 H 0.07 3.64 6.08 -2.39 -0.01 3.62 15 19 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 20 H 0.02 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.32 13.90 8.98 -89.69 -0.81 13.10 15 22 H 0.31 11.92 7.43 -89.69 -0.67 11.26 15 23 H 0.25 13.62 8.31 -92.70 -0.77 12.85 15 24 H 0.14 4.06 6.60 -2.91 -0.02 4.04 15 25 H 0.17 3.05 8.06 -2.91 -0.02 3.03 15 26 H 0.18 3.85 8.06 -2.91 -0.02 3.82 15 27 H 0.14 6.35 6.42 -2.91 -0.02 6.33 15 Total: -1.00 -59.79 229.63 2.11 -57.68 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: -0.28 Total: 26.70 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 3.39 Total: -23.10 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -3.03 Total: -106.29 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -59.79 2.11 -57.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329758.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.879 kcal (2) G-P(sol) polarization free energy of solvation -59.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds