Wall clock time and date at job start Mon Mar 30 2020 02:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47163 * 2 1 4 4 C 1.50701 * 109.47444 * 239.99573 * 2 1 3 5 5 H 1.07992 * 120.00320 * 241.13787 * 4 2 1 6 6 C 1.37887 * 119.99793 * 61.14206 * 4 2 1 7 7 N 1.31514 * 119.99489 * 2.06046 * 6 4 2 8 8 Si 1.86794 * 119.99994 * 181.79226 * 6 4 2 9 9 H 1.48498 * 109.47103 * 270.27250 * 8 6 4 10 10 H 1.48499 * 109.47102 * 30.27042 * 8 6 4 11 11 H 1.48500 * 109.47418 * 150.27381 * 8 6 4 12 12 C 1.50703 * 109.47121 * 119.99685 * 2 1 3 13 13 C 1.38665 * 120.41993 * 269.72338 * 12 2 1 14 14 C 1.38633 * 118.42372 * 179.78446 * 13 12 2 15 15 C 1.38225 * 119.15753 * 0.50975 * 14 13 12 16 16 N 1.31855 * 120.76243 * 359.72677 * 15 14 13 17 17 C 1.31888 * 121.72781 * 0.02562 * 16 15 14 18 18 H 1.09008 * 109.47010 * 174.94109 * 1 2 3 19 19 H 1.08996 * 109.47187 * 294.93854 * 1 2 3 20 20 H 1.08995 * 109.47311 * 54.94442 * 1 2 3 21 21 H 1.00902 * 111.00055 * 186.01185 * 3 2 1 22 22 H 1.00896 * 110.99625 * 309.96398 * 3 2 1 23 23 H 0.96997 * 120.00810 * 354.34567 * 7 6 4 24 24 H 1.08003 * 120.78971 * 0.02562 * 13 12 2 25 25 H 1.07993 * 120.41888 * 180.22370 * 14 13 12 26 26 H 1.07995 * 119.61893 * 179.75125 * 15 14 13 27 27 H 1.08001 * 119.61690 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6380 -1.5991 -1.1314 6 6 1.7188 -0.2259 -2.4826 7 7 1.0155 0.8789 -2.6030 8 14 2.2994 -1.1344 -4.0080 9 1 3.6342 -0.6233 -4.4106 10 1 2.3938 -2.5868 -3.7132 11 1 1.3317 -0.9155 -5.1129 12 6 2.0323 -0.7104 1.2305 13 6 2.2718 -0.0048 2.4000 14 6 2.7291 -0.7004 3.5085 15 6 2.9398 -2.0629 3.4088 16 7 2.7059 -2.7005 2.2786 17 6 2.2659 -2.0720 1.2059 18 1 -0.3633 -1.0237 -0.0906 19 1 -0.3633 0.4333 0.9318 20 1 -0.3634 0.5902 -0.8412 21 1 3.0234 1.4137 -0.0987 22 1 1.5697 1.9275 -0.7220 23 1 0.6477 1.3081 -1.8147 24 1 2.1023 1.0608 2.4473 25 1 2.9226 -0.1836 4.4368 26 1 3.2998 -2.6115 4.2665 27 1 2.0861 -2.6281 0.2976 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329759.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:18 Heat of formation + Delta-G solvation = 37.935015 kcal Electronic energy + Delta-G solvation = -11922.856750 eV Core-core repulsion = 9873.660865 eV Total energy + Delta-G solvation = -2049.195885 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.57080 -36.35022 -32.08326 -31.14479 -29.70171 -27.52946 -25.40053 -22.89633 -22.57493 -19.45000 -17.52876 -16.50944 -15.44896 -14.73403 -14.06626 -13.86349 -13.37706 -13.06214 -12.77236 -12.32134 -11.67111 -11.52082 -11.07515 -10.85009 -10.71389 -10.36615 -10.19496 -9.37707 -9.10701 -8.77223 -8.63522 -8.19687 -7.35856 -6.38881 -4.31959 1.81208 1.99611 3.34473 3.38001 3.53549 4.37591 4.51826 5.04912 5.16635 5.43271 5.64426 5.74604 5.85849 5.99787 6.28170 6.45048 6.60818 6.65579 6.75497 7.01025 7.09704 7.26192 7.44624 7.84601 8.15251 8.47791 8.56993 8.60935 8.77324 9.39733 10.80900 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049716 B = 0.012832 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.067290 B = 2181.603472 C = 2513.286767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.251 3.749 3 N -0.853 5.853 4 C -0.622 4.622 5 H 0.057 0.943 6 C 0.031 3.969 7 N -0.915 5.915 8 Si 1.068 2.932 9 H -0.288 1.288 10 H -0.287 1.287 11 H -0.284 1.284 12 C -0.079 4.079 13 C -0.071 4.071 14 C -0.188 4.188 15 C 0.066 3.934 16 N -0.497 5.497 17 C 0.102 3.898 18 H 0.045 0.955 19 H 0.026 0.974 20 H 0.066 0.934 21 H 0.326 0.674 22 H 0.341 0.659 23 H 0.276 0.724 24 H 0.136 0.864 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.605 -1.469 6.620 6.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 N -0.384 5.384 4 C -0.662 4.662 5 H 0.075 0.925 6 C -0.174 4.174 7 N -0.557 5.557 8 Si 0.896 3.104 9 H -0.214 1.214 10 H -0.213 1.213 11 H -0.209 1.209 12 C -0.082 4.082 13 C -0.097 4.097 14 C -0.208 4.208 15 C -0.091 4.091 16 N -0.206 5.206 17 C -0.054 4.054 18 H 0.064 0.936 19 H 0.046 0.954 20 H 0.084 0.916 21 H 0.136 0.864 22 H 0.157 0.843 23 H 0.093 0.907 24 H 0.154 0.846 25 H 0.139 0.861 26 H 0.159 0.841 27 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.446 -2.237 5.681 6.275 hybrid contribution 0.219 0.614 0.765 1.005 sum 1.665 -1.623 6.446 6.852 Atomic orbital electron populations 1.21913 0.96588 1.00761 0.99793 1.17416 0.91417 0.86081 0.89127 1.59451 1.10056 1.13791 1.55145 1.22668 1.36233 1.15061 0.92245 0.92494 1.25789 0.94626 0.95736 1.01257 1.70933 1.33294 1.16875 1.34549 0.83552 0.76307 0.75254 0.75280 1.21450 1.21294 1.20931 1.21232 0.95983 0.94820 0.96154 1.21583 0.95412 1.00921 0.91765 1.22043 1.03301 0.95975 0.99450 1.22506 0.98708 0.92053 0.95808 1.67692 1.12316 1.40716 0.99835 1.22920 0.94079 0.92605 0.95821 0.93595 0.95446 0.91577 0.86359 0.84260 0.90682 0.84598 0.86056 0.84106 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.37 37.16 0.31 -2.71 15 2 C 0.25 5.86 0.77 -133.90 -0.10 5.75 15 3 N -0.85 -19.03 7.78 -1.14 -0.01 -19.03 15 4 C -0.62 -16.02 7.52 -34.44 -0.26 -16.28 15 5 H 0.06 1.48 6.02 -52.49 -0.32 1.17 15 6 C 0.03 0.81 5.23 -17.82 -0.09 0.72 15 7 N -0.91 -25.01 12.72 55.43 0.70 -24.31 15 8 Si 1.07 23.94 29.90 -169.99 -5.08 18.86 15 9 H -0.29 -6.33 7.11 56.52 0.40 -5.93 15 10 H -0.29 -6.22 7.11 56.52 0.40 -5.81 15 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 12 C -0.08 -1.71 4.83 -104.48 -0.50 -2.22 15 13 C -0.07 -1.34 9.44 -39.28 -0.37 -1.72 15 14 C -0.19 -3.10 10.11 -39.44 -0.40 -3.50 15 15 C 0.07 1.13 11.18 -17.55 -0.20 0.94 15 16 N -0.50 -9.96 10.36 -13.25 -0.14 -10.10 15 17 C 0.10 2.20 10.07 -17.55 -0.18 2.02 15 18 H 0.04 1.04 8.14 -51.92 -0.42 0.62 15 19 H 0.03 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.07 1.60 5.46 -51.93 -0.28 1.31 15 21 H 0.33 7.30 8.96 -39.29 -0.35 6.95 15 22 H 0.34 8.00 6.04 -39.29 -0.24 7.76 15 23 H 0.28 7.32 3.21 -40.82 -0.13 7.19 15 24 H 0.14 2.50 7.49 -52.48 -0.39 2.10 15 25 H 0.12 1.58 8.06 -52.49 -0.42 1.16 15 26 H 0.14 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.16 3.50 6.42 -52.49 -0.34 3.16 15 LS Contribution 225.59 15.07 3.40 3.40 Total: -1.00 -27.41 225.59 -5.45 -32.86 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -2.54 Total: 15.32 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -1.79 Total: -17.00 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: 0.56 Total: -53.44 kcal Atomic # 14 Polarization: 23.94 SS G_CDS: -5.08 Total: 18.86 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.41 -5.45 -32.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329759.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.794 kcal (2) G-P(sol) polarization free energy of solvation -27.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds