Wall clock time and date at job start Mon Mar 30 2020 02:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.47163 * 2 1 4 4 C 1.50701 * 109.47444 * 239.99573 * 2 1 3 5 5 H 1.07992 * 120.00320 * 241.13787 * 4 2 1 6 6 C 1.37887 * 119.99793 * 61.14206 * 4 2 1 7 7 N 1.31514 * 119.99489 * 2.06046 * 6 4 2 8 8 Si 1.86794 * 119.99994 * 181.79226 * 6 4 2 9 9 H 1.48498 * 109.47103 * 270.27250 * 8 6 4 10 10 H 1.48499 * 109.47102 * 30.27042 * 8 6 4 11 11 H 1.48500 * 109.47418 * 150.27381 * 8 6 4 12 12 C 1.50703 * 109.47121 * 119.99685 * 2 1 3 13 13 C 1.38665 * 120.41993 * 269.72338 * 12 2 1 14 14 C 1.38633 * 118.42372 * 179.78446 * 13 12 2 15 15 C 1.38225 * 119.15753 * 0.50975 * 14 13 12 16 16 N 1.31855 * 120.76243 * 359.72677 * 15 14 13 17 17 C 1.31888 * 121.72781 * 0.02562 * 16 15 14 18 18 H 1.09008 * 109.47010 * 174.94109 * 1 2 3 19 19 H 1.08996 * 109.47187 * 294.93854 * 1 2 3 20 20 H 1.08995 * 109.47311 * 54.94442 * 1 2 3 21 21 H 1.00902 * 111.00055 * 186.01185 * 3 2 1 22 22 H 1.00896 * 110.99625 * 309.96398 * 3 2 1 23 23 H 0.96997 * 120.00810 * 354.34567 * 7 6 4 24 24 H 1.08003 * 120.78971 * 0.02562 * 13 12 2 25 25 H 1.07993 * 120.41888 * 180.22370 * 14 13 12 26 26 H 1.07995 * 119.61893 * 179.75125 * 15 14 13 27 27 H 1.08001 * 119.61690 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6380 -1.5991 -1.1314 6 6 1.7188 -0.2259 -2.4826 7 7 1.0155 0.8789 -2.6030 8 14 2.2994 -1.1344 -4.0080 9 1 3.6342 -0.6233 -4.4106 10 1 2.3938 -2.5868 -3.7132 11 1 1.3317 -0.9155 -5.1129 12 6 2.0323 -0.7104 1.2305 13 6 2.2718 -0.0048 2.4000 14 6 2.7291 -0.7004 3.5085 15 6 2.9398 -2.0629 3.4088 16 7 2.7059 -2.7005 2.2786 17 6 2.2659 -2.0720 1.2059 18 1 -0.3633 -1.0237 -0.0906 19 1 -0.3633 0.4333 0.9318 20 1 -0.3634 0.5902 -0.8412 21 1 3.0234 1.4137 -0.0987 22 1 1.5697 1.9275 -0.7220 23 1 0.6477 1.3081 -1.8147 24 1 2.1023 1.0608 2.4473 25 1 2.9226 -0.1836 4.4368 26 1 3.2998 -2.6115 4.2665 27 1 2.0861 -2.6281 0.2976 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329759.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:17 Heat of formation + Delta-G solvation = 19.833213 kcal Electronic energy + Delta-G solvation = -11923.641703 eV Core-core repulsion = 9873.660865 eV Total energy + Delta-G solvation = -2049.980838 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09309 -38.13786 -33.84137 -32.69341 -31.37597 -29.31952 -27.33587 -24.46139 -24.12677 -21.21944 -19.40185 -18.00949 -17.01334 -16.46541 -15.80251 -15.44612 -14.98270 -14.80941 -14.43708 -13.80284 -13.52342 -13.18893 -12.90585 -12.70453 -12.52092 -12.05637 -11.96969 -11.23950 -10.65038 -10.52896 -10.27646 -9.73579 -9.25114 -8.41006 -6.37241 0.34946 0.51078 1.52867 1.58415 1.76685 2.52817 3.00737 3.15672 3.66453 3.96390 4.16331 4.18626 4.35440 4.46777 4.66358 4.79409 4.83400 4.97164 5.17342 5.35310 5.38646 5.59259 5.85592 6.00565 6.13897 6.58025 6.62913 6.83866 7.15432 7.39717 8.77362 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049716 B = 0.012832 C = 0.011138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.067290 B = 2181.603472 C = 2513.286767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.246 3.754 3 N -0.838 5.838 4 C -0.629 4.629 5 H 0.046 0.954 6 C -0.011 4.011 7 N -0.937 5.937 8 Si 1.107 2.893 9 H -0.279 1.279 10 H -0.278 1.278 11 H -0.286 1.286 12 C -0.104 4.104 13 C -0.075 4.075 14 C -0.171 4.171 15 C 0.069 3.931 16 N -0.513 5.513 17 C 0.083 3.917 18 H 0.037 0.963 19 H 0.041 0.959 20 H 0.048 0.952 21 H 0.325 0.675 22 H 0.334 0.666 23 H 0.274 0.726 24 H 0.142 0.858 25 H 0.167 0.833 26 H 0.184 0.816 27 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.389 -1.622 8.361 8.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.154 3.846 3 N -0.368 5.368 4 C -0.668 4.668 5 H 0.065 0.935 6 C -0.211 4.211 7 N -0.580 5.580 8 Si 0.931 3.069 9 H -0.205 1.205 10 H -0.204 1.204 11 H -0.211 1.211 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.190 4.190 15 C -0.088 4.088 16 N -0.222 5.222 17 C -0.072 4.072 18 H 0.057 0.943 19 H 0.060 0.940 20 H 0.067 0.933 21 H 0.135 0.865 22 H 0.149 0.851 23 H 0.090 0.910 24 H 0.159 0.841 25 H 0.184 0.816 26 H 0.201 0.799 27 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.233 -2.394 7.432 8.121 hybrid contribution -0.001 0.644 0.369 0.742 sum 2.232 -1.750 7.801 8.301 Atomic orbital electron populations 1.21797 0.96682 0.99999 0.99717 1.17402 0.91454 0.86288 0.89469 1.59449 1.09780 1.13138 1.54429 1.22932 1.35659 1.14736 0.93520 0.93549 1.26825 0.94549 0.95924 1.03801 1.70991 1.34534 1.17802 1.34668 0.83021 0.76177 0.74886 0.72789 1.20547 1.20371 1.21128 1.21078 0.98061 0.94965 0.96513 1.21732 0.95389 1.01263 0.91747 1.22467 1.00684 0.95745 1.00087 1.23265 0.96941 0.92851 0.95758 1.67690 1.12774 1.41305 1.00438 1.22650 0.95824 0.92619 0.96131 0.94341 0.93976 0.93286 0.86508 0.85116 0.90982 0.84062 0.81571 0.79915 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.37 71.98 0.60 -5.10 15 2 C 0.25 11.51 0.77 2.03 0.00 11.51 15 3 N -0.84 -37.28 7.78 -157.51 -1.22 -38.50 15 4 C -0.63 -32.83 7.52 25.60 0.19 -32.64 15 5 H 0.05 2.47 6.02 -2.91 -0.02 2.46 15 6 C -0.01 -0.56 5.23 84.66 0.44 -0.12 15 7 N -0.94 -51.79 12.72 21.45 0.27 -51.51 15 8 Si 1.11 48.56 29.90 68.60 2.05 50.61 15 9 H -0.28 -11.80 7.11 99.48 0.71 -11.09 15 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 15 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 15 12 C -0.10 -4.41 4.83 -19.78 -0.10 -4.50 15 13 C -0.08 -2.68 9.44 22.47 0.21 -2.47 15 14 C -0.17 -4.90 10.11 22.36 0.23 -4.67 15 15 C 0.07 2.10 11.18 84.69 0.95 3.04 15 16 N -0.51 -19.69 10.36 -195.85 -2.03 -21.72 15 17 C 0.08 3.58 10.07 84.67 0.85 4.43 15 18 H 0.04 1.77 8.14 -2.38 -0.02 1.75 15 19 H 0.04 1.76 8.14 -2.39 -0.02 1.74 15 20 H 0.05 2.41 5.46 -2.39 -0.01 2.39 15 21 H 0.33 14.49 8.96 -89.69 -0.80 13.68 15 22 H 0.33 15.77 6.04 -89.70 -0.54 15.23 15 23 H 0.27 14.75 3.21 -92.71 -0.30 14.45 15 24 H 0.14 4.84 7.49 -2.91 -0.02 4.82 15 25 H 0.17 3.31 8.06 -2.91 -0.02 3.28 15 26 H 0.18 3.95 8.06 -2.91 -0.02 3.93 15 27 H 0.14 6.35 6.42 -2.91 -0.02 6.33 15 Total: -1.00 -58.22 225.59 2.77 -55.45 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 0.32 Total: 36.19 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 3.38 Total: -30.51 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -2.98 Total: -111.74 kcal Atomic # 14 Polarization: 48.56 SS G_CDS: 2.05 Total: 50.61 kcal Total: -58.22 2.77 -55.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329759.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.282 kcal (2) G-P(sol) polarization free energy of solvation -58.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds