Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.46879 * 2 1 4 4 C 1.50690 * 109.47375 * 120.00072 * 2 1 3 5 5 H 1.07999 * 120.00458 * 119.99569 * 4 2 1 6 6 C 1.37885 * 119.99997 * 300.00465 * 4 2 1 7 7 N 1.31513 * 119.99854 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00208 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47257 * 59.99394 * 8 6 4 10 10 H 1.48495 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46937 * 299.99820 * 8 6 4 12 12 C 1.50707 * 109.46679 * 240.00190 * 2 1 3 13 13 C 1.38227 * 119.62059 * 65.02237 * 12 2 1 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 2 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 244.99667 * 12 2 1 18 18 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47136 * 300.00003 * 1 2 3 20 20 H 1.09004 * 109.47426 * 60.00046 * 1 2 3 21 21 H 1.00910 * 110.99980 * 180.02562 * 3 2 1 22 22 H 1.00906 * 111.00311 * 303.95313 * 3 2 1 23 23 H 0.97002 * 120.00392 * 180.02562 * 7 6 4 24 24 H 1.07998 * 120.41916 * 359.95342 * 13 12 2 25 25 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 26 26 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 27 27 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8258 -2.5202 4.0076 12 6 2.0323 -0.7104 -1.2306 13 6 1.7815 -0.1737 -2.4795 14 6 2.2526 -0.8323 -3.6046 15 6 2.9528 -2.0167 -3.4314 16 6 3.1652 -2.4923 -2.1515 17 7 2.7062 -1.8366 -1.1033 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 3.0283 1.4119 -0.0004 22 1 1.6441 1.9013 -0.7814 23 1 0.7094 1.1618 3.4844 24 1 1.2286 0.7489 -2.5772 25 1 2.0750 -0.4345 -4.5930 26 1 3.3313 -2.5582 -4.2858 27 1 3.7131 -3.4118 -2.0079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084329761.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = 43.334003 kcal Electronic energy + Delta-G solvation = -11872.926126 eV Core-core repulsion = 9823.964358 eV Total energy + Delta-G solvation = -2048.961768 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.59852 -35.41770 -31.87005 -31.63201 -29.53934 -27.39442 -25.16100 -22.93654 -22.67225 -19.49406 -16.41013 -16.26812 -15.14247 -14.88230 -14.30526 -13.91414 -13.43686 -13.13143 -12.64525 -12.41407 -11.69525 -11.03969 -10.75925 -10.62736 -10.51822 -10.26065 -9.68565 -9.31867 -9.15665 -8.41901 -8.35325 -8.20480 -7.12240 -5.71731 -3.83557 1.72565 1.87677 3.45571 3.48925 3.53431 4.48604 4.60140 5.08106 5.22645 5.42634 5.48436 5.58950 5.73116 6.16754 6.19276 6.34664 6.59941 6.70818 6.84072 7.07985 7.23370 7.35085 7.91492 8.19843 8.34088 8.63818 8.88676 9.07763 9.31585 9.83588 11.29999 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050610 B = 0.012911 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.118776 B = 2168.200544 C = 2536.418790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.282 3.718 3 N -0.797 5.797 4 C -0.509 4.509 5 H 0.075 0.925 6 C 0.078 3.922 7 N -0.855 5.855 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.280 1.280 12 C 0.138 3.862 13 C -0.188 4.188 14 C -0.084 4.084 15 C -0.204 4.204 16 C 0.088 3.912 17 N -0.453 5.453 18 H 0.030 0.970 19 H 0.099 0.901 20 H 0.007 0.993 21 H 0.320 0.680 22 H 0.296 0.704 23 H 0.252 0.748 24 H 0.125 0.875 25 H 0.121 0.879 26 H 0.121 0.879 27 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -2.220 -9.597 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.190 3.810 3 N -0.323 5.323 4 C -0.548 4.548 5 H 0.093 0.907 6 C -0.127 4.127 7 N -0.492 5.492 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.205 1.205 12 C -0.003 4.003 13 C -0.208 4.208 14 C -0.110 4.110 15 C -0.224 4.224 16 C -0.070 4.070 17 N -0.161 5.161 18 H 0.049 0.951 19 H 0.117 0.883 20 H 0.026 0.974 21 H 0.132 0.868 22 H 0.107 0.893 23 H 0.062 0.938 24 H 0.143 0.857 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.439 -2.337 -7.892 8.355 hybrid contribution 0.677 -0.420 -1.159 1.407 sum 2.116 -2.757 -9.051 9.695 Atomic orbital electron populations 1.21770 0.95930 0.99263 1.01022 1.17581 0.92083 0.83883 0.87447 1.59343 1.11708 1.13981 1.47242 1.20991 1.32924 1.12235 0.88694 0.90735 1.24955 0.94769 0.94458 0.98491 1.70015 1.35282 1.21661 1.22212 0.86797 0.79202 0.79778 0.82808 1.20564 1.21686 1.20538 1.23549 0.89694 0.90373 0.96668 1.22036 1.02879 1.02103 0.93791 1.21423 0.96174 0.94877 0.98544 1.21948 1.03411 0.98320 0.98726 1.22915 0.96620 0.98875 0.88557 1.67875 1.08243 1.07558 1.32435 0.95058 0.88257 0.97424 0.86793 0.89328 0.93752 0.85728 0.86053 0.86086 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.94 8.37 37.16 0.31 -2.63 15 2 C 0.28 6.93 0.63 -133.91 -0.08 6.84 15 3 N -0.80 -18.57 8.11 -1.14 -0.01 -18.58 15 4 C -0.51 -14.17 7.97 -34.44 -0.27 -14.44 15 5 H 0.07 2.14 6.58 -52.49 -0.35 1.80 15 6 C 0.08 2.18 5.23 -17.82 -0.09 2.08 15 7 N -0.86 -24.41 10.80 55.43 0.60 -23.81 15 8 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 15 9 H -0.28 -6.94 7.11 56.52 0.40 -6.53 15 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 15 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 12 C 0.14 3.03 5.72 -82.58 -0.47 2.56 15 13 C -0.19 -3.43 8.90 -39.44 -0.35 -3.78 15 14 C -0.08 -1.31 10.18 -39.28 -0.40 -1.71 15 15 C -0.20 -3.10 10.11 -39.44 -0.40 -3.50 15 16 C 0.09 1.56 11.18 -17.55 -0.20 1.37 15 17 N -0.45 -10.05 8.47 -9.47 -0.08 -10.13 15 18 H 0.03 0.75 8.14 -51.93 -0.42 0.33 15 19 H 0.10 2.66 6.07 -51.93 -0.32 2.34 15 20 H 0.01 0.15 7.68 -51.93 -0.40 -0.25 15 21 H 0.32 7.38 8.98 -39.29 -0.35 7.03 15 22 H 0.30 6.05 8.00 -39.29 -0.31 5.73 15 23 H 0.25 7.00 8.31 -40.82 -0.34 6.66 15 24 H 0.12 2.08 7.24 -52.49 -0.38 1.70 15 25 H 0.12 1.47 8.06 -52.48 -0.42 1.05 15 26 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 27 H 0.14 2.10 8.06 -52.49 -0.42 1.67 15 LS Contribution 231.70 15.07 3.49 3.49 Total: -1.00 -30.15 231.70 -5.91 -36.06 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -2.93 Total: 9.29 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.96 Total: -13.21 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.51 Total: -52.52 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -30.15 -5.91 -36.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329761.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.397 kcal (2) G-P(sol) polarization free energy of solvation -30.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds