Wall clock time and date at job start Mon Mar 30 2020 02:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46895 * 109.46879 * 2 1 4 4 C 1.50690 * 109.47375 * 120.00072 * 2 1 3 5 5 H 1.07999 * 120.00458 * 119.99569 * 4 2 1 6 6 C 1.37885 * 119.99997 * 300.00465 * 4 2 1 7 7 N 1.31513 * 119.99854 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00208 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47257 * 59.99394 * 8 6 4 10 10 H 1.48495 * 109.47325 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46937 * 299.99820 * 8 6 4 12 12 C 1.50707 * 109.46679 * 240.00190 * 2 1 3 13 13 C 1.38227 * 119.62059 * 65.02237 * 12 2 1 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 2 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 244.99667 * 12 2 1 18 18 H 1.09003 * 109.47430 * 180.02562 * 1 2 3 19 19 H 1.08998 * 109.47136 * 300.00003 * 1 2 3 20 20 H 1.09004 * 109.47426 * 60.00046 * 1 2 3 21 21 H 1.00910 * 110.99980 * 180.02562 * 3 2 1 22 22 H 1.00906 * 111.00311 * 303.95313 * 3 2 1 23 23 H 0.97002 * 120.00392 * 180.02562 * 7 6 4 24 24 H 1.07998 * 120.41916 * 359.95342 * 13 12 2 25 25 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 26 26 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 27 27 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.8064 -1.1209 4.0081 10 1 1.8269 -0.4200 5.2204 11 1 1.8258 -2.5202 4.0076 12 6 2.0323 -0.7104 -1.2306 13 6 1.7815 -0.1737 -2.4795 14 6 2.2526 -0.8323 -3.6046 15 6 2.9528 -2.0167 -3.4314 16 6 3.1652 -2.4923 -2.1515 17 7 2.7062 -1.8366 -1.1033 18 1 -0.3634 -1.0277 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 3.0283 1.4119 -0.0004 22 1 1.6441 1.9013 -0.7814 23 1 0.7094 1.1618 3.4844 24 1 1.2286 0.7489 -2.5772 25 1 2.0750 -0.4345 -4.5930 26 1 3.3313 -2.5582 -4.2858 27 1 3.7131 -3.4118 -2.0079 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084329761.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:10 Heat of formation + Delta-G solvation = 21.994983 kcal Electronic energy + Delta-G solvation = -11873.851455 eV Core-core repulsion = 9823.964358 eV Total energy + Delta-G solvation = -2049.887097 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.02739 -37.19796 -33.66147 -33.21124 -31.04123 -29.26747 -27.19295 -24.48098 -24.05833 -21.23703 -18.20245 -17.77201 -16.70316 -16.51956 -16.05839 -15.72981 -15.06280 -14.66320 -14.29745 -13.86656 -13.41044 -12.82645 -12.61358 -12.53169 -12.40406 -12.17887 -11.67858 -11.02847 -10.65800 -10.39154 -9.96308 -9.76951 -8.88018 -7.82004 -5.98873 0.36385 0.57847 1.46290 1.46503 1.54144 2.54972 3.07702 3.38407 3.73125 4.09776 4.12805 4.25479 4.42004 4.46989 4.85510 4.89910 5.04392 5.17194 5.30068 5.34558 5.40540 5.82429 6.03619 6.09459 6.42754 6.74413 7.15556 7.31767 7.47750 7.72212 9.16963 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.050610 B = 0.012911 C = 0.011037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.118776 B = 2168.200544 C = 2536.418790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.276 3.724 3 N -0.805 5.805 4 C -0.522 4.522 5 H 0.057 0.943 6 C 0.035 3.965 7 N -0.876 5.876 8 Si 0.938 3.062 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.280 1.280 12 C 0.103 3.897 13 C -0.191 4.191 14 C -0.077 4.077 15 C -0.184 4.184 16 C 0.070 3.930 17 N -0.502 5.502 18 H 0.018 0.982 19 H 0.070 0.930 20 H 0.033 0.967 21 H 0.319 0.681 22 H 0.312 0.688 23 H 0.250 0.750 24 H 0.136 0.864 25 H 0.165 0.835 26 H 0.166 0.834 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 -2.653 -11.782 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.184 3.816 3 N -0.332 5.332 4 C -0.561 4.561 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.513 5.513 8 Si 0.765 3.235 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.206 1.206 12 C -0.037 4.037 13 C -0.211 4.211 14 C -0.103 4.103 15 C -0.204 4.204 16 C -0.087 4.087 17 N -0.211 5.211 18 H 0.037 0.963 19 H 0.089 0.911 20 H 0.052 0.948 21 H 0.130 0.870 22 H 0.125 0.875 23 H 0.059 0.941 24 H 0.154 0.846 25 H 0.183 0.817 26 H 0.184 0.816 27 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.960 -2.772 -10.084 10.640 hybrid contribution 0.553 -0.354 -0.612 0.897 sum 2.512 -3.126 -10.696 11.423 Atomic orbital electron populations 1.21590 0.96332 0.98274 1.00783 1.17379 0.91833 0.84415 0.87971 1.59145 1.11612 1.14028 1.48451 1.21225 1.32409 1.11984 0.90511 0.92518 1.25537 0.95233 0.95236 1.00719 1.70134 1.36195 1.22640 1.22316 0.85973 0.78482 0.78744 0.80257 1.20651 1.21146 1.20596 1.23041 0.92230 0.91452 0.96933 1.22125 1.03073 1.02638 0.93314 1.21920 0.94508 0.94372 0.99450 1.22414 1.01233 0.97846 0.98925 1.23393 0.96782 0.99542 0.88989 1.67676 1.09718 1.08468 1.35232 0.96312 0.91092 0.94849 0.86989 0.87530 0.94089 0.84585 0.81715 0.81625 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.45 8.37 71.98 0.60 -4.85 15 2 C 0.28 13.69 0.63 2.04 0.00 13.69 15 3 N -0.81 -37.69 8.11 -157.52 -1.28 -38.97 15 4 C -0.52 -29.70 7.97 25.60 0.20 -29.50 15 5 H 0.06 3.36 6.58 -2.91 -0.02 3.34 15 6 C 0.03 1.98 5.23 84.66 0.44 2.43 15 7 N -0.88 -50.87 10.80 21.45 0.23 -50.64 15 8 Si 0.94 45.84 29.54 68.60 2.03 47.87 15 9 H -0.28 -13.63 7.11 99.48 0.71 -12.92 15 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 15 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 15 12 C 0.10 4.49 5.72 42.55 0.24 4.74 15 13 C -0.19 -6.55 8.90 22.36 0.20 -6.35 15 14 C -0.08 -2.04 10.18 22.47 0.23 -1.81 15 15 C -0.18 -4.80 10.11 22.36 0.23 -4.57 15 16 C 0.07 2.34 11.18 84.67 0.95 3.29 15 17 N -0.50 -22.11 8.47 -183.88 -1.56 -23.67 15 18 H 0.02 0.90 8.14 -2.39 -0.02 0.88 15 19 H 0.07 3.87 6.07 -2.39 -0.01 3.86 15 20 H 0.03 1.40 7.68 -2.39 -0.02 1.38 15 21 H 0.32 14.85 8.98 -89.69 -0.81 14.04 15 22 H 0.31 12.59 8.00 -89.69 -0.72 11.87 15 23 H 0.25 14.07 8.31 -92.71 -0.77 13.30 15 24 H 0.14 4.20 7.24 -2.91 -0.02 4.18 15 25 H 0.17 2.96 8.06 -2.91 -0.02 2.94 15 26 H 0.17 2.84 8.06 -2.91 -0.02 2.81 15 27 H 0.17 4.48 8.06 -2.91 -0.02 4.46 15 Total: -1.00 -66.15 231.70 2.18 -63.97 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.34 Total: 24.38 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.09 Total: -22.94 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -2.60 Total: -113.28 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -66.15 2.18 -63.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084329761.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.963 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds