Wall clock time and date at job start Mon Mar 30 2020 01:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31889 * 119.62031 * 2 1 4 4 C 1.31855 * 121.72771 * 180.30772 * 3 2 1 5 5 C 1.38218 * 120.76300 * 359.71632 * 4 3 2 6 6 C 1.38633 * 119.16231 * 359.97438 * 5 4 3 7 7 C 1.38188 * 119.61885 * 179.73659 * 2 1 3 8 8 C 1.50698 * 120.41567 * 359.97438 * 7 2 1 9 9 H 1.08998 * 109.46890 * 324.72427 * 8 7 2 10 10 N 1.46902 * 109.46969 * 204.72656 * 8 7 2 11 11 C 1.50694 * 109.47166 * 84.72436 * 8 7 2 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 8 7 13 13 C 1.37885 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31516 * 119.99913 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99854 * 179.72538 * 13 11 8 16 16 H 1.48504 * 109.47032 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46816 * 120.00323 * 15 13 11 18 18 H 1.48495 * 109.46630 * 240.00111 * 15 13 11 19 19 H 1.09000 * 109.47154 * 270.26259 * 1 2 3 20 20 H 1.08997 * 109.46965 * 30.26255 * 1 2 3 21 21 H 1.08995 * 109.46681 * 150.26483 * 1 2 3 22 22 H 1.07998 * 119.61610 * 179.68605 * 4 3 2 23 23 H 1.08001 * 120.41840 * 180.02562 * 5 4 3 24 24 H 1.08003 * 120.78652 * 180.02562 * 6 5 4 25 25 H 1.00893 * 111.00125 * 176.04936 * 10 8 7 26 26 H 1.00903 * 110.99764 * 299.99906 * 10 8 7 27 27 H 0.97001 * 119.99646 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1589 1.1465 0.0000 4 6 3.4765 1.1950 -0.0060 5 6 4.2267 0.0341 -0.0067 6 6 3.5766 -1.1903 -0.0005 7 6 2.1900 -1.2013 0.0055 8 6 1.4373 -2.5068 0.0121 9 1 0.5292 -2.3996 0.6054 10 7 2.2828 -3.5566 0.5962 11 6 1.0726 -2.8836 -1.4007 12 1 1.3571 -2.2417 -2.2213 13 6 0.3758 -4.0479 -1.6457 14 7 0.0290 -4.8293 -0.6464 15 14 -0.0829 -4.5110 -3.3963 16 1 0.4147 -3.4693 -4.3305 17 1 0.5325 -5.8181 -3.7399 18 1 -1.5598 -4.6141 -3.5101 19 1 -0.3633 0.0047 1.0276 20 1 -0.3633 0.8876 -0.5179 21 1 -0.3632 -0.8923 -0.5097 22 1 3.9753 2.1529 -0.0110 23 1 5.3057 0.0804 -0.0113 24 1 4.1368 -2.1136 -0.0004 25 1 1.7784 -4.4271 0.6711 26 1 3.1316 -3.6751 0.0636 27 1 -0.4609 -5.6486 -0.8188 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104455720.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:43 Heat of formation + Delta-G solvation = 21.753226 kcal Electronic energy + Delta-G solvation = -11759.717141 eV Core-core repulsion = 9709.819561 eV Total energy + Delta-G solvation = -2049.897580 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.58010 -35.11254 -32.32592 -32.00085 -29.94858 -26.80818 -26.14104 -23.51806 -21.33502 -20.14664 -16.61050 -16.28405 -15.57851 -14.95218 -14.18320 -13.73113 -13.47135 -12.79626 -12.45654 -12.07891 -11.78154 -11.67534 -11.36435 -11.17592 -10.97611 -10.72231 -10.12164 -9.74029 -8.97651 -8.73149 -8.71537 -7.97985 -7.28633 -6.16940 -4.34166 1.85696 2.08577 3.16762 3.26197 3.31186 4.25239 4.54625 5.00665 5.05061 5.46646 5.64776 5.74120 5.85201 6.18197 6.29986 6.36276 6.45118 6.59600 6.85609 6.94996 7.03088 7.41459 7.62866 7.66951 7.99970 8.58148 8.68471 8.84758 9.02559 9.38118 10.80459 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045916 B = 0.011973 C = 0.011321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.666325 B = 2337.949707 C = 2472.653912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.118 3.882 3 N -0.493 5.493 4 C 0.066 3.934 5 C -0.186 4.186 6 C -0.073 4.073 7 C -0.075 4.075 8 C 0.243 3.757 9 H 0.056 0.944 10 N -0.852 5.852 11 C -0.543 4.543 12 H 0.056 0.944 13 C 0.068 3.932 14 N -0.891 5.891 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.281 1.281 19 H 0.066 0.934 20 H 0.062 0.938 21 H 0.095 0.905 22 H 0.142 0.858 23 H 0.121 0.879 24 H 0.130 0.870 25 H 0.357 0.643 26 H 0.311 0.689 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.992 5.067 0.378 6.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.020 4.020 3 N -0.203 5.203 4 C -0.091 4.091 5 C -0.206 4.206 6 C -0.099 4.099 7 C -0.077 4.077 8 C 0.132 3.868 9 H 0.073 0.927 10 N -0.382 5.382 11 C -0.582 4.582 12 H 0.074 0.926 13 C -0.135 4.135 14 N -0.530 5.530 15 Si 0.724 3.276 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.207 1.207 19 H 0.085 0.915 20 H 0.081 0.919 21 H 0.114 0.886 22 H 0.159 0.841 23 H 0.139 0.861 24 H 0.148 0.852 25 H 0.174 0.826 26 H 0.120 0.880 27 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.421 6.142 1.088 7.115 hybrid contribution 0.227 -1.588 -1.936 2.514 sum 3.648 4.554 -0.848 5.897 Atomic orbital electron populations 1.20746 0.89282 1.03852 1.02232 1.21078 0.96913 0.87762 0.96211 1.67400 1.09874 1.29836 1.13184 1.22376 0.89805 0.97665 0.99267 1.21979 1.00455 0.93967 1.04230 1.21384 0.94568 0.97595 0.96317 1.21314 0.94248 0.97697 0.94450 1.17976 0.90954 0.84055 0.93785 0.92677 1.59559 1.09218 1.13852 1.55566 1.21776 1.36670 1.06721 0.93077 0.92607 1.25016 0.94785 0.96209 0.97491 1.69747 1.39311 1.13399 1.30575 0.86458 0.78352 0.78376 0.84404 1.19722 1.20902 1.20697 0.91513 0.91865 0.88587 0.84092 0.86082 0.85227 0.82648 0.87982 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 9.39 36.01 0.34 -1.66 15 2 C 0.12 2.51 6.78 -82.59 -0.56 1.95 15 3 N -0.49 -9.94 10.27 -9.47 -0.10 -10.03 15 4 C 0.07 1.15 11.18 -17.55 -0.20 0.96 15 5 C -0.19 -3.17 10.11 -39.44 -0.40 -3.57 15 6 C -0.07 -1.43 9.38 -39.28 -0.37 -1.80 15 7 C -0.07 -1.65 5.01 -104.48 -0.52 -2.17 15 8 C 0.24 5.89 2.27 -70.02 -0.16 5.73 15 9 H 0.06 1.45 7.02 -51.93 -0.36 1.08 15 10 N -0.85 -19.78 8.80 -6.65 -0.06 -19.84 15 11 C -0.54 -14.13 7.92 -34.44 -0.27 -14.40 15 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 15 13 C 0.07 1.77 5.38 -17.82 -0.10 1.67 15 14 N -0.89 -23.76 11.54 55.43 0.64 -23.12 15 15 Si 0.90 20.48 29.54 -169.99 -5.02 15.46 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 18 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 19 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 20 H 0.06 1.10 8.14 -51.93 -0.42 0.68 15 21 H 0.10 2.01 6.14 -51.93 -0.32 1.69 15 22 H 0.14 1.95 8.06 -52.49 -0.42 1.53 15 23 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 24 H 0.13 2.40 6.41 -52.48 -0.34 2.06 15 25 H 0.36 8.85 7.08 -39.30 -0.28 8.58 15 26 H 0.31 6.81 7.27 -39.29 -0.29 6.52 15 27 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 LS Contribution 231.25 15.07 3.48 3.48 Total: -1.00 -27.49 231.25 -6.10 -33.60 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -2.82 Total: 13.75 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.24 Total: -13.30 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.48 Total: -52.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -27.49 -6.10 -33.60 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104455720.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.351 kcal (2) G-P(sol) polarization free energy of solvation -27.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds