Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 120.41830 * 2 1 4 4 N 1.31855 * 120.76613 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72525 * 359.97438 * 4 3 2 6 6 C 1.38189 * 120.76297 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.41384 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46916 * 160.00271 * 7 6 5 9 9 N 1.46899 * 109.47571 * 40.00072 * 7 6 5 10 10 C 1.50706 * 109.46824 * 279.99604 * 7 6 5 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00420 * 14 12 10 18 18 C 1.38627 * 120.42101 * 180.26115 * 2 1 3 19 19 H 1.08993 * 109.47711 * 89.99910 * 1 2 3 20 20 H 1.09003 * 109.46895 * 209.99725 * 1 2 3 21 21 H 1.09001 * 109.47281 * 329.99213 * 1 2 3 22 22 H 1.08003 * 119.61736 * 359.97438 * 3 2 1 23 23 H 1.07995 * 119.62177 * 180.02562 * 5 4 3 24 24 H 1.00896 * 110.99761 * 300.00391 * 9 7 6 25 25 H 1.00898 * 110.99366 * 63.95282 * 9 7 6 26 26 H 0.97000 * 119.99706 * 359.97438 * 13 12 10 27 27 H 1.07998 * 120.78754 * 359.97025 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4028 -2.4191 -0.0001 8 1 3.7828 -3.2435 0.3523 9 7 5.5619 -2.2635 0.8888 10 6 4.8786 -2.7112 -1.3999 11 1 4.6220 -2.0424 -2.2081 12 6 5.6416 -3.8324 -1.6486 13 7 5.9537 -4.6471 -0.6645 14 14 6.2321 -4.1941 -3.3836 15 1 7.0271 -5.4484 -3.3844 16 1 5.0606 -4.3507 -4.2827 17 1 7.0775 -3.0713 -3.8629 18 6 2.2089 -1.1954 -0.0054 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5140 22 1 1.6674 2.1277 -0.0004 23 1 5.3046 0.1286 -0.0005 24 1 6.1527 -1.5048 0.5830 25 1 5.2689 -2.1309 1.8451 26 1 5.6473 -4.4590 0.2364 27 1 1.6888 -2.1419 -0.0093 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104456228.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = 20.184427 kcal Electronic energy + Delta-G solvation = -11558.280036 eV Core-core repulsion = 9508.314428 eV Total energy + Delta-G solvation = -2049.965609 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.77820 -35.34227 -33.18856 -31.78961 -29.94113 -26.91815 -25.72352 -23.04582 -22.46803 -20.05316 -16.89454 -16.58697 -15.96383 -14.57708 -14.25472 -13.88633 -13.63326 -13.16935 -12.63810 -12.53547 -12.34796 -12.07652 -12.00565 -11.01139 -10.73238 -10.53778 -10.06794 -9.33397 -8.98517 -8.77014 -8.38113 -8.08306 -7.55754 -6.23435 -4.07628 1.61415 1.83939 3.46337 3.47766 3.66414 4.29221 4.58319 4.89378 5.12098 5.20816 5.37503 5.47552 5.58885 5.67906 5.85179 5.94402 6.00482 6.13895 6.34603 6.63950 6.74360 7.14854 7.25337 7.89260 8.20936 8.45615 8.57991 8.68480 8.99342 9.76185 11.16447 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047930 B = 0.010379 C = 0.009971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.044262 B = 2697.087391 C = 2807.412860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.143 4.143 3 C 0.065 3.935 4 N -0.485 5.485 5 C 0.085 3.915 6 C -0.110 4.110 7 C 0.242 3.758 8 H 0.040 0.960 9 N -0.829 5.829 10 C -0.611 4.611 11 H 0.046 0.954 12 C 0.040 3.960 13 N -0.888 5.888 14 Si 1.065 2.935 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.289 1.289 18 C -0.083 4.083 19 H 0.068 0.932 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.144 0.856 23 H 0.148 0.852 24 H 0.327 0.673 25 H 0.303 0.697 26 H 0.290 0.710 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 7.124 1.720 10.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.145 4.145 3 C -0.092 4.092 4 N -0.193 5.193 5 C -0.072 4.072 6 C -0.115 4.115 7 C 0.132 3.868 8 H 0.057 0.943 9 N -0.356 5.356 10 C -0.650 4.650 11 H 0.064 0.936 12 C -0.170 4.170 13 N -0.521 5.521 14 Si 0.893 3.107 15 H -0.208 1.208 16 H -0.217 1.217 17 H -0.215 1.215 18 C -0.110 4.110 19 H 0.087 0.913 20 H 0.083 0.917 21 H 0.083 0.917 22 H 0.161 0.839 23 H 0.165 0.835 24 H 0.140 0.860 25 H 0.113 0.887 26 H 0.102 0.898 27 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.216 6.084 0.614 8.720 hybrid contribution -1.753 1.332 0.995 2.416 sum -7.970 7.416 1.609 11.005 Atomic orbital electron populations 1.20657 0.90962 1.02416 1.02147 1.20858 0.96977 0.94508 1.02137 1.22385 0.90202 0.96830 0.99807 1.67570 1.08217 1.31719 1.11794 1.22468 1.00013 0.87359 0.97403 1.22497 0.95077 0.99850 0.94028 1.18328 0.86863 0.87228 0.94399 0.94262 1.59446 1.21565 1.51069 1.03529 1.21656 1.39550 1.12673 0.91114 0.93596 1.25647 0.93832 0.92533 1.05020 1.70562 1.41265 1.37271 1.03041 0.83632 0.76356 0.76245 0.74440 1.20793 1.21678 1.21532 1.21404 0.94054 0.97589 0.97954 0.91320 0.91680 0.91740 0.83904 0.83467 0.85956 0.88654 0.89770 0.85501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.04 36.00 0.36 -0.88 15 2 C -0.14 -2.32 5.90 -104.48 -0.62 -2.94 15 3 C 0.07 1.09 10.86 -17.55 -0.19 0.90 15 4 N -0.49 -9.39 10.36 -13.25 -0.14 -9.53 15 5 C 0.08 1.72 10.46 -17.55 -0.18 1.54 15 6 C -0.11 -2.34 4.89 -104.48 -0.51 -2.85 15 7 C 0.24 5.84 2.48 -70.01 -0.17 5.67 15 8 H 0.04 1.02 7.90 -51.93 -0.41 0.61 15 9 N -0.83 -18.62 7.63 -6.65 -0.05 -18.67 15 10 C -0.61 -16.85 8.71 -34.44 -0.30 -17.15 15 11 H 0.05 1.30 7.74 -52.49 -0.41 0.89 15 12 C 0.04 1.12 5.39 -17.82 -0.10 1.03 15 13 N -0.89 -26.43 13.51 55.43 0.75 -25.68 15 14 Si 1.06 25.11 29.90 -169.99 -5.08 20.03 15 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 16 H -0.29 -6.59 7.11 56.52 0.40 -6.18 15 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 18 C -0.08 -1.58 9.51 -39.28 -0.37 -1.95 15 19 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 20 H 0.06 0.72 8.10 -51.93 -0.42 0.30 15 21 H 0.06 0.64 8.09 -51.93 -0.42 0.22 15 22 H 0.14 1.92 8.06 -52.48 -0.42 1.50 15 23 H 0.15 2.91 6.68 -52.49 -0.35 2.56 15 24 H 0.33 7.09 7.37 -39.29 -0.29 6.80 15 25 H 0.30 6.01 9.06 -39.29 -0.36 5.66 15 26 H 0.29 8.60 6.39 -40.82 -0.26 8.34 15 27 H 0.13 2.26 8.06 -52.49 -0.42 1.84 15 LS Contribution 236.55 15.07 3.56 3.56 Total: -1.00 -30.52 236.55 -6.02 -36.54 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -2.98 Total: 10.39 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -2.08 Total: -16.64 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.56 Total: -53.88 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -30.52 -6.02 -36.54 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456228.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.729 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds