Wall clock time and date at job start Mon Mar 30 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 120.41830 * 2 1 4 4 N 1.31855 * 120.76613 * 180.02562 * 3 2 1 5 5 C 1.31886 * 121.72525 * 359.97438 * 4 3 2 6 6 C 1.38189 * 120.76297 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.41384 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46916 * 160.00271 * 7 6 5 9 9 N 1.46899 * 109.47571 * 40.00072 * 7 6 5 10 10 C 1.50706 * 109.46824 * 279.99604 * 7 6 5 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 7 6 12 12 C 1.37879 * 119.99398 * 180.02562 * 10 7 6 13 13 N 1.31514 * 120.00338 * 0.02562 * 12 10 7 14 14 Si 1.86800 * 119.99424 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.46845 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 299.99813 * 14 12 10 17 17 H 1.48498 * 109.47295 * 60.00420 * 14 12 10 18 18 C 1.38627 * 120.42101 * 180.26115 * 2 1 3 19 19 H 1.08993 * 109.47711 * 89.99910 * 1 2 3 20 20 H 1.09003 * 109.46895 * 209.99725 * 1 2 3 21 21 H 1.09001 * 109.47281 * 329.99213 * 1 2 3 22 22 H 1.08003 * 119.61736 * 359.97438 * 3 2 1 23 23 H 1.07995 * 119.62177 * 180.02562 * 5 4 3 24 24 H 1.00896 * 110.99761 * 300.00391 * 9 7 6 25 25 H 1.00898 * 110.99366 * 63.95282 * 9 7 6 26 26 H 0.97000 * 119.99706 * 359.97438 * 13 12 10 27 27 H 1.07998 * 120.78754 * 359.97025 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.2000 -0.0005 5 6 4.2257 0.0824 -0.0005 6 6 3.5948 -1.1470 0.0005 7 6 4.4028 -2.4191 -0.0001 8 1 3.7828 -3.2435 0.3523 9 7 5.5619 -2.2635 0.8888 10 6 4.8786 -2.7112 -1.3999 11 1 4.6220 -2.0424 -2.2081 12 6 5.6416 -3.8324 -1.6486 13 7 5.9537 -4.6471 -0.6645 14 14 6.2321 -4.1941 -3.3836 15 1 7.0271 -5.4484 -3.3844 16 1 5.0606 -4.3507 -4.2827 17 1 7.0775 -3.0713 -3.8629 18 6 2.2089 -1.1954 -0.0054 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8899 0.5140 22 1 1.6674 2.1277 -0.0004 23 1 5.3046 0.1286 -0.0005 24 1 6.1527 -1.5048 0.5830 25 1 5.2689 -2.1309 1.8451 26 1 5.6473 -4.4590 0.2364 27 1 1.6888 -2.1419 -0.0093 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104456228.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:15 Heat of formation + Delta-G solvation = -1.204181 kcal Electronic energy + Delta-G solvation = -11559.207516 eV Core-core repulsion = 9508.314428 eV Total energy + Delta-G solvation = -2050.893088 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24302 -37.17106 -34.49855 -33.76468 -31.58129 -28.14301 -27.69409 -24.79408 -23.99859 -21.68806 -18.91601 -18.03720 -17.48351 -16.35067 -16.01460 -15.48825 -15.19426 -14.59729 -14.14425 -14.03245 -13.89395 -13.52002 -13.27124 -12.72378 -12.49867 -12.37718 -11.91602 -11.11909 -10.56167 -10.44435 -10.34333 -9.72012 -9.33111 -8.42927 -6.30012 0.18726 0.35403 1.55237 1.62090 1.81678 2.60264 2.85846 3.27411 3.52062 3.90479 3.95192 4.05802 4.14610 4.20474 4.43150 4.70070 4.80104 4.88274 4.99350 5.16752 5.33355 5.45472 5.79666 5.88143 6.14397 6.60280 6.72426 6.97169 7.00342 7.61105 8.93972 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.047930 B = 0.010379 C = 0.009971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.044262 B = 2697.087391 C = 2807.412860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.130 4.130 3 C 0.067 3.933 4 N -0.498 5.498 5 C 0.072 3.928 6 C -0.134 4.134 7 C 0.247 3.753 8 H 0.013 0.987 9 N -0.834 5.834 10 C -0.620 4.620 11 H 0.033 0.967 12 C -0.007 4.007 13 N -0.915 5.915 14 Si 1.109 2.891 15 H -0.283 1.283 16 H -0.276 1.276 17 H -0.277 1.277 18 C -0.098 4.098 19 H 0.082 0.918 20 H 0.073 0.927 21 H 0.092 0.908 22 H 0.185 0.815 23 H 0.143 0.857 24 H 0.331 0.669 25 H 0.318 0.682 26 H 0.279 0.721 27 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.301 8.527 1.233 12.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.132 4.132 3 C -0.091 4.091 4 N -0.206 5.206 5 C -0.084 4.084 6 C -0.138 4.138 7 C 0.137 3.863 8 H 0.031 0.969 9 N -0.363 5.363 10 C -0.659 4.659 11 H 0.051 0.949 12 C -0.211 4.211 13 N -0.550 5.550 14 Si 0.932 3.068 15 H -0.209 1.209 16 H -0.201 1.201 17 H -0.202 1.202 18 C -0.124 4.124 19 H 0.101 0.899 20 H 0.091 0.909 21 H 0.111 0.889 22 H 0.201 0.799 23 H 0.160 0.840 24 H 0.145 0.855 25 H 0.130 0.870 26 H 0.091 0.909 27 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.771 7.501 0.139 10.802 hybrid contribution -1.398 0.997 1.198 2.093 sum -9.169 8.498 1.337 12.573 Atomic orbital electron populations 1.20768 0.87317 1.04303 1.03533 1.21297 0.99448 0.93032 0.99401 1.23137 0.89490 0.98752 0.97707 1.67610 1.09695 1.31006 1.12305 1.22357 1.00059 0.87495 0.98527 1.22188 0.96040 0.98681 0.96895 1.17982 0.87210 0.88137 0.92967 0.96869 1.59214 1.21349 1.51461 1.04283 1.21939 1.39124 1.12228 0.92570 0.94911 1.26954 0.93810 0.92543 1.07805 1.70676 1.43009 1.38269 1.03025 0.83041 0.76572 0.76319 0.70846 1.20873 1.20121 1.20232 1.21611 0.93385 0.99184 0.98258 0.89948 0.90855 0.88915 0.79859 0.83981 0.85523 0.86994 0.90938 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.99 10.04 71.24 0.71 -1.27 15 2 C -0.13 -3.85 5.90 -19.77 -0.12 -3.96 15 3 C 0.07 2.03 10.86 84.69 0.92 2.95 15 4 N -0.50 -18.47 10.36 -195.84 -2.03 -20.50 15 5 C 0.07 2.91 10.46 84.67 0.89 3.80 15 6 C -0.13 -5.72 4.89 -19.77 -0.10 -5.82 15 7 C 0.25 12.27 2.48 43.42 0.11 12.38 15 8 H 0.01 0.73 7.90 -2.39 -0.02 0.71 15 9 N -0.83 -38.43 7.63 -174.95 -1.33 -39.76 15 10 C -0.62 -34.82 8.71 25.60 0.22 -34.60 15 11 H 0.03 1.88 7.74 -2.91 -0.02 1.86 15 12 C -0.01 -0.39 5.39 84.66 0.46 0.06 15 13 N -0.91 -55.46 13.51 21.45 0.29 -55.17 15 14 Si 1.11 50.68 29.90 68.60 2.05 52.73 15 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 15 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 18 C -0.10 -3.61 9.51 22.47 0.21 -3.40 15 19 H 0.08 1.46 8.14 -2.39 -0.02 1.44 15 20 H 0.07 1.34 8.10 -2.39 -0.02 1.33 15 21 H 0.09 1.33 8.09 -2.39 -0.02 1.31 15 22 H 0.18 4.01 8.06 -2.91 -0.02 3.98 15 23 H 0.14 5.73 6.68 -2.91 -0.02 5.71 15 24 H 0.33 14.70 7.37 -89.70 -0.66 14.04 15 25 H 0.32 12.90 9.06 -89.70 -0.81 12.09 15 26 H 0.28 17.04 6.39 -92.71 -0.59 16.45 15 27 H 0.13 4.60 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -65.87 236.55 2.17 -63.70 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.11 Total: 28.87 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 3.31 Total: -29.85 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -3.07 Total: -115.44 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -65.87 2.17 -63.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456228.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.492 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds