Wall clock time and date at job start Mon Mar 30 2020 02:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38669 * 120.79395 * 2 1 4 4 C 1.38184 * 119.16212 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76553 * 359.74607 * 4 3 2 6 6 C 1.31853 * 121.72641 * 0.52486 * 5 4 3 7 7 C 1.50697 * 119.61774 * 179.75317 * 6 5 4 8 8 H 1.08999 * 109.47706 * 64.72526 * 7 6 5 9 9 N 1.46906 * 109.47064 * 184.72321 * 7 6 5 10 10 C 1.50701 * 109.47065 * 304.72331 * 7 6 5 11 11 H 1.08001 * 120.00367 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99893 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99853 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00063 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47119 * 89.99257 * 14 12 10 16 16 H 1.48497 * 109.47049 * 209.99747 * 14 12 10 17 17 H 1.48502 * 109.46789 * 329.99615 * 14 12 10 18 18 C 1.38225 * 120.76224 * 359.47471 * 6 5 4 19 19 H 1.09006 * 109.46965 * 269.97951 * 1 2 3 20 20 H 1.09003 * 109.46882 * 29.97411 * 1 2 3 21 21 H 1.08997 * 109.47917 * 149.97630 * 1 2 3 22 22 H 1.07995 * 120.41949 * 0.02562 * 3 2 1 23 23 H 1.08006 * 119.61510 * 179.97438 * 4 3 2 24 24 H 1.00896 * 111.00309 * 296.04459 * 9 7 6 25 25 H 1.00902 * 110.99923 * 60.00622 * 9 7 6 26 26 H 0.96998 * 119.99658 * 179.97438 * 13 12 10 27 27 H 1.08006 * 120.41968 * 180.27973 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1518 -0.0005 5 7 4.2402 -0.0001 0.0040 6 6 3.5982 -1.1518 -0.0011 7 6 4.3799 -2.4402 -0.0013 8 1 4.9400 -2.5256 0.9299 9 7 3.4541 -3.5745 -0.1214 10 6 5.3367 -2.4471 -1.1655 11 1 5.3753 -1.6028 -1.8379 12 6 6.1629 -3.5315 -1.3724 13 7 6.1163 -4.5594 -0.5533 14 14 7.3495 -3.5398 -2.8151 15 1 8.6447 -2.9477 -2.3942 16 1 7.5678 -4.9370 -3.2683 17 1 6.7791 -2.7412 -3.9296 18 6 2.2165 -1.1910 -0.0006 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3635 -0.8897 -0.5142 22 1 1.6968 2.1377 0.0004 23 1 4.1584 2.0752 -0.0010 24 1 2.8439 -3.6298 0.6801 25 1 2.9228 -3.5185 -0.9774 26 1 6.6973 -5.3224 -0.6991 27 1 1.6963 -2.1375 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104517173.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:38 Heat of formation + Delta-G solvation = 33.089256 kcal Electronic energy + Delta-G solvation = -11546.579488 eV Core-core repulsion = 9497.173475 eV Total energy + Delta-G solvation = -2049.406013 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.66630 -34.81286 -33.36210 -31.70990 -29.37670 -27.42800 -26.16279 -23.29351 -21.89023 -19.88220 -16.47013 -15.90225 -15.72380 -14.85317 -14.44401 -14.10417 -13.70012 -13.13958 -12.56539 -12.51071 -12.27255 -12.05492 -11.32130 -11.06608 -10.76351 -10.60258 -9.81243 -9.29509 -8.96154 -8.67324 -8.42459 -8.12871 -7.19184 -5.81918 -3.93760 1.76298 1.83778 3.39998 3.45722 3.49741 4.41960 4.59360 5.00821 5.06301 5.17681 5.41063 5.54106 5.61908 5.65015 5.82061 5.91149 6.21882 6.25353 6.39585 6.59241 6.79832 7.37139 7.39750 7.99427 8.19100 8.52088 8.90783 8.96544 9.17046 9.72656 11.23343 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.053781 B = 0.010528 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.500668 B = 2658.941061 C = 2937.901168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.049 4.049 3 C -0.209 4.209 4 C 0.098 3.902 5 N -0.472 5.472 6 C 0.142 3.858 7 C 0.262 3.738 8 H 0.060 0.940 9 N -0.806 5.806 10 C -0.514 4.514 11 H 0.056 0.944 12 C 0.080 3.920 13 N -0.852 5.852 14 Si 0.888 3.112 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.276 1.276 18 C -0.198 4.198 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.121 0.879 23 H 0.144 0.856 24 H 0.299 0.701 25 H 0.320 0.680 26 H 0.255 0.745 27 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.372 7.702 1.178 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 C -0.229 4.229 4 C -0.060 4.060 5 N -0.181 5.181 6 C 0.003 3.997 7 C 0.152 3.848 8 H 0.077 0.923 9 N -0.333 5.333 10 C -0.554 4.554 11 H 0.074 0.926 12 C -0.126 4.126 13 N -0.487 5.487 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.214 1.214 17 H -0.201 1.201 18 C -0.218 4.218 19 H 0.089 0.911 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.139 0.861 23 H 0.162 0.838 24 H 0.110 0.890 25 H 0.133 0.867 26 H 0.065 0.935 27 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.730 7.017 1.238 10.513 hybrid contribution -1.074 0.831 -0.819 1.586 sum -8.804 7.848 0.419 11.802 Atomic orbital electron populations 1.20760 0.91161 1.02664 1.02190 1.20204 0.96014 0.93358 0.96066 1.21800 0.95863 0.97848 1.07428 1.22806 0.91472 0.96710 0.95028 1.67697 1.40846 0.97748 1.11832 1.23651 0.91266 0.96911 0.87861 1.18171 0.89349 0.77863 0.99424 0.92251 1.59235 1.22990 1.47218 1.03853 1.20714 1.19736 1.03099 1.11806 0.92588 1.24945 0.96311 0.95396 0.95922 1.70104 1.36733 1.05925 1.35919 0.86685 0.81625 0.76916 0.83159 1.20718 1.21358 1.20142 1.21915 0.95832 0.98179 1.05864 0.91147 0.91639 0.91404 0.86112 0.83820 0.88974 0.86717 0.93503 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.06 36.00 0.36 -0.93 15 2 C -0.05 -0.78 5.92 -104.32 -0.62 -1.39 15 3 C -0.21 -3.28 9.82 -39.44 -0.39 -3.66 15 4 C 0.10 1.76 11.18 -17.55 -0.20 1.56 15 5 N -0.47 -10.56 9.97 -9.47 -0.09 -10.66 15 6 C 0.14 3.21 6.11 -82.59 -0.50 2.70 15 7 C 0.26 6.72 3.10 -70.01 -0.22 6.51 15 8 H 0.06 1.69 8.14 -51.93 -0.42 1.27 15 9 N -0.81 -18.75 7.83 -6.65 -0.05 -18.81 15 10 C -0.51 -14.65 8.53 -34.44 -0.29 -14.94 15 11 H 0.06 1.64 7.69 -52.49 -0.40 1.24 15 12 C 0.08 2.29 5.39 -17.82 -0.10 2.20 15 13 N -0.85 -25.13 12.77 55.43 0.71 -24.42 15 14 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 15 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 15 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 15 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 18 C -0.20 -3.70 8.77 -39.44 -0.35 -4.04 15 19 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 20 H 0.06 0.66 8.10 -51.93 -0.42 0.24 15 21 H 0.07 0.74 8.10 -51.93 -0.42 0.32 15 22 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 23 H 0.14 2.10 8.06 -52.48 -0.42 1.68 15 24 H 0.30 6.05 8.09 -39.29 -0.32 5.74 15 25 H 0.32 7.11 8.26 -39.29 -0.32 6.79 15 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 27 H 0.13 2.14 6.20 -52.48 -0.33 1.82 15 LS Contribution 237.46 15.07 3.58 3.58 Total: -1.00 -31.37 237.46 -6.22 -37.59 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.04 Total: 7.76 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.30 Total: -12.01 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: 0.56 Total: -53.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.37 -6.22 -37.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104517173.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.678 kcal (2) G-P(sol) polarization free energy of solvation -31.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds