Wall clock time and date at job start Mon Mar 30 2020 02:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38669 * 120.79395 * 2 1 4 4 C 1.38184 * 119.16212 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.76553 * 359.74607 * 4 3 2 6 6 C 1.31853 * 121.72641 * 0.52486 * 5 4 3 7 7 C 1.50697 * 119.61774 * 179.75317 * 6 5 4 8 8 H 1.08999 * 109.47706 * 64.72526 * 7 6 5 9 9 N 1.46906 * 109.47064 * 184.72321 * 7 6 5 10 10 C 1.50701 * 109.47065 * 304.72331 * 7 6 5 11 11 H 1.08001 * 120.00367 * 0.02562 * 10 7 6 12 12 C 1.37884 * 119.99893 * 180.02562 * 10 7 6 13 13 N 1.31518 * 119.99853 * 359.97438 * 12 10 7 14 14 Si 1.86799 * 120.00063 * 180.02562 * 12 10 7 15 15 H 1.48498 * 109.47119 * 89.99257 * 14 12 10 16 16 H 1.48497 * 109.47049 * 209.99747 * 14 12 10 17 17 H 1.48502 * 109.46789 * 329.99615 * 14 12 10 18 18 C 1.38225 * 120.76224 * 359.47471 * 6 5 4 19 19 H 1.09006 * 109.46965 * 269.97951 * 1 2 3 20 20 H 1.09003 * 109.46882 * 29.97411 * 1 2 3 21 21 H 1.08997 * 109.47917 * 149.97630 * 1 2 3 22 22 H 1.07995 * 120.41949 * 0.02562 * 3 2 1 23 23 H 1.08006 * 119.61510 * 179.97438 * 4 3 2 24 24 H 1.00896 * 111.00309 * 296.04459 * 9 7 6 25 25 H 1.00902 * 110.99923 * 60.00622 * 9 7 6 26 26 H 0.96998 * 119.99658 * 179.97438 * 13 12 10 27 27 H 1.08006 * 120.41968 * 180.27973 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1912 0.0000 4 6 3.5982 1.1518 -0.0005 5 7 4.2402 -0.0001 0.0040 6 6 3.5982 -1.1518 -0.0011 7 6 4.3799 -2.4402 -0.0013 8 1 4.9400 -2.5256 0.9299 9 7 3.4541 -3.5745 -0.1214 10 6 5.3367 -2.4471 -1.1655 11 1 5.3753 -1.6028 -1.8379 12 6 6.1629 -3.5315 -1.3724 13 7 6.1163 -4.5594 -0.5533 14 14 7.3495 -3.5398 -2.8151 15 1 8.6447 -2.9477 -2.3942 16 1 7.5678 -4.9370 -3.2683 17 1 6.7791 -2.7412 -3.9296 18 6 2.2165 -1.1910 -0.0006 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3635 -0.8897 -0.5142 22 1 1.6968 2.1377 0.0004 23 1 4.1584 2.0752 -0.0010 24 1 2.8439 -3.6298 0.6801 25 1 2.9228 -3.5185 -0.9774 26 1 6.6973 -5.3224 -0.6991 27 1 1.6963 -2.1375 -0.0003 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104517173.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:38 Heat of formation + Delta-G solvation = 10.265440 kcal Electronic energy + Delta-G solvation = -11547.569203 eV Core-core repulsion = 9497.173475 eV Total energy + Delta-G solvation = -2050.395728 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.11564 -36.63667 -34.69449 -33.77244 -30.92908 -28.67505 -28.08895 -25.07568 -23.32512 -21.50699 -18.57058 -17.33426 -17.18998 -16.58041 -16.30265 -15.80176 -14.96570 -14.70023 -14.29244 -13.82989 -13.56154 -13.28201 -13.14128 -12.74466 -12.71049 -12.33814 -11.76354 -11.34954 -10.57898 -10.30728 -10.16909 -9.70763 -9.01990 -7.98625 -6.17660 0.33950 0.48568 1.42226 1.43121 1.53116 2.46733 3.01238 3.24611 3.68597 3.88603 3.95778 4.19775 4.36973 4.46165 4.67898 4.77717 4.82519 4.95983 5.07694 5.23986 5.38321 5.49023 5.76167 5.96709 6.16994 6.58109 7.01944 7.19825 7.39261 7.53244 9.05653 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.053781 B = 0.010528 C = 0.009528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.500668 B = 2658.941061 C = 2937.901168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.046 4.046 3 C -0.192 4.192 4 C 0.082 3.918 5 N -0.519 5.519 6 C 0.107 3.893 7 C 0.268 3.732 8 H 0.014 0.986 9 N -0.812 5.812 10 C -0.529 4.529 11 H 0.039 0.961 12 C 0.033 3.967 13 N -0.881 5.881 14 Si 0.952 3.048 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.275 1.275 18 C -0.202 4.202 19 H 0.088 0.912 20 H 0.089 0.911 21 H 0.074 0.926 22 H 0.166 0.834 23 H 0.172 0.828 24 H 0.316 0.684 25 H 0.327 0.673 26 H 0.256 0.744 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.214 9.203 0.571 14.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.054 4.054 3 C -0.212 4.212 4 C -0.075 4.075 5 N -0.230 5.230 6 C -0.032 4.032 7 C 0.157 3.843 8 H 0.031 0.969 9 N -0.340 5.340 10 C -0.569 4.569 11 H 0.057 0.943 12 C -0.171 4.171 13 N -0.518 5.518 14 Si 0.778 3.222 15 H -0.204 1.204 16 H -0.204 1.204 17 H -0.200 1.200 18 C -0.222 4.222 19 H 0.107 0.893 20 H 0.108 0.892 21 H 0.093 0.907 22 H 0.184 0.816 23 H 0.189 0.811 24 H 0.129 0.871 25 H 0.140 0.860 26 H 0.065 0.935 27 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.583 8.523 0.633 12.841 hybrid contribution -0.586 0.493 -0.580 0.960 sum -10.169 9.016 0.053 13.590 Atomic orbital electron populations 1.20852 0.87469 1.04252 1.03803 1.20751 0.98539 0.92250 0.93852 1.22287 0.94961 0.99687 1.04268 1.23345 0.93223 0.96165 0.94772 1.67514 1.42878 0.99024 1.13565 1.23081 0.92674 0.95782 0.91659 1.17693 0.89719 0.80671 0.96207 0.96873 1.58964 1.23319 1.46810 1.04922 1.20933 1.20964 1.02544 1.12413 0.94266 1.25673 0.97868 0.95067 0.98446 1.70217 1.37683 1.06424 1.37438 0.85687 0.79382 0.77170 0.79984 1.20369 1.20434 1.19959 1.21997 0.94319 1.00145 1.05725 0.89306 0.89220 0.90749 0.81626 0.81076 0.87124 0.86030 0.93463 0.84473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 10.06 71.23 0.72 -1.28 15 2 C -0.05 -1.32 5.92 -19.67 -0.12 -1.44 15 3 C -0.19 -5.32 9.82 22.36 0.22 -5.10 15 4 C 0.08 2.82 11.18 84.67 0.95 3.77 15 5 N -0.52 -23.61 9.97 -183.89 -1.83 -25.44 15 6 C 0.11 4.91 6.11 42.55 0.26 5.17 15 7 C 0.27 14.34 3.10 43.42 0.13 14.47 15 8 H 0.01 0.83 8.14 -2.39 -0.02 0.81 15 9 N -0.81 -38.71 7.83 -174.95 -1.37 -40.08 15 10 C -0.53 -31.22 8.53 25.60 0.22 -31.00 15 11 H 0.04 2.38 7.69 -2.91 -0.02 2.36 15 12 C 0.03 1.90 5.39 84.66 0.46 2.36 15 13 N -0.88 -53.27 12.77 21.45 0.27 -53.00 15 14 Si 0.95 45.97 29.54 68.60 2.03 48.00 15 15 H -0.28 -13.17 7.11 99.48 0.71 -12.46 15 16 H -0.28 -12.98 7.11 99.48 0.71 -12.28 15 17 H -0.27 -13.06 7.11 99.48 0.71 -12.35 15 18 C -0.20 -7.35 8.77 22.36 0.20 -7.16 15 19 H 0.09 1.40 8.14 -2.38 -0.02 1.38 15 20 H 0.09 1.29 8.10 -2.39 -0.02 1.27 15 21 H 0.07 1.33 8.10 -2.39 -0.02 1.31 15 22 H 0.17 3.08 8.06 -2.91 -0.02 3.06 15 23 H 0.17 4.64 8.06 -2.91 -0.02 4.62 15 24 H 0.32 13.03 8.09 -89.70 -0.73 12.30 15 25 H 0.33 14.71 8.26 -89.69 -0.74 13.97 15 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 27 H 0.14 4.52 6.20 -2.91 -0.02 4.50 15 Total: -1.00 -70.16 237.46 1.85 -68.31 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -0.28 Total: 22.42 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 3.03 Total: -20.21 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -2.93 Total: -118.52 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -70.16 1.85 -68.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104517173.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.579 kcal (2) G-P(sol) polarization free energy of solvation -70.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds