Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38670 * 120.42291 * 2 1 4 4 C 1.38634 * 118.42226 * 180.24208 * 3 2 1 5 5 C 1.38220 * 119.16109 * 359.74716 * 4 3 2 6 6 N 1.31854 * 120.76492 * 0.02562 * 5 4 3 7 7 C 1.31891 * 121.72492 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.61701 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47060 * 165.00413 * 8 7 6 10 10 N 1.46901 * 109.46921 * 45.00232 * 8 7 6 11 11 C 1.50699 * 109.47269 * 285.00266 * 8 7 6 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31522 * 119.99730 * 179.97438 * 13 11 8 15 15 Si 1.86801 * 120.00223 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.46854 * 89.99533 * 15 13 11 17 17 H 1.48495 * 109.46995 * 209.99565 * 15 13 11 18 18 H 1.48503 * 109.46814 * 329.99605 * 15 13 11 19 19 H 1.08996 * 109.46891 * 270.25794 * 1 2 3 20 20 H 1.08998 * 109.46469 * 30.25771 * 1 2 3 21 21 H 1.08998 * 109.47246 * 150.25463 * 1 2 3 22 22 H 1.08003 * 120.79068 * 359.96638 * 3 2 1 23 23 H 1.07997 * 120.41697 * 179.73130 * 4 3 2 24 24 H 1.08003 * 119.62200 * 180.02562 * 5 4 3 25 25 H 1.00898 * 111.00245 * 299.99784 * 10 8 7 26 26 H 1.00904 * 111.00313 * 63.95601 * 10 8 7 27 27 H 0.96999 * 119.99784 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1474 -0.0052 5 6 4.2257 -0.0824 -0.0048 6 7 3.5255 -1.1997 -0.0001 7 6 2.2066 -1.1916 0.0049 8 6 1.4539 -2.4972 0.0095 9 1 0.4134 -2.3157 0.2791 10 7 2.0614 -3.4092 0.9879 11 6 1.5164 -3.1180 -1.3622 12 1 2.0484 -2.6174 -2.1577 13 6 0.8953 -4.3255 -1.6013 14 7 0.9495 -4.8671 -2.7987 15 14 -0.0242 -5.1917 -0.2252 16 1 -1.4409 -4.7465 -0.2199 17 1 0.0325 -6.6600 -0.4396 18 1 0.6048 -4.8569 1.0777 19 1 -0.3633 0.0046 1.0276 20 1 -0.3632 0.8877 -0.5178 21 1 -0.3633 -0.8922 -0.5099 22 1 1.6891 2.1423 -0.0005 23 1 4.1736 2.0590 -0.0097 24 1 5.3047 -0.1288 -0.0083 25 1 3.0269 -3.5932 0.7598 26 1 1.9744 -3.0447 1.9248 27 1 0.5122 -5.7164 -2.9670 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104517746.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = 36.644079 kcal Electronic energy + Delta-G solvation = -11778.015958 eV Core-core repulsion = 9728.764093 eV Total energy + Delta-G solvation = -2049.251865 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.80706 -34.88379 -33.09463 -31.86045 -30.45292 -26.82719 -26.30226 -23.49716 -21.62143 -20.12530 -16.92170 -16.19226 -15.78326 -14.67475 -14.34219 -14.03493 -13.62756 -13.06911 -12.66467 -12.34010 -12.29228 -12.03185 -11.78007 -10.98142 -10.74575 -10.33790 -9.94636 -9.28602 -9.16818 -8.82452 -8.48641 -8.13941 -7.12919 -5.95700 -4.05024 1.64903 1.78972 3.52927 3.64204 3.96571 4.33623 4.74427 4.93404 5.15879 5.31946 5.34501 5.44024 5.56312 5.82197 5.98609 6.02491 6.06162 6.35092 6.46764 6.54239 6.73904 6.95231 7.25929 7.59553 8.26613 8.38599 8.66763 8.80327 9.04667 9.67386 11.14323 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049160 B = 0.012564 C = 0.011984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.434686 B = 2228.095992 C = 2335.799553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.197 4.197 5 C 0.087 3.913 6 N -0.473 5.473 7 C 0.141 3.859 8 C 0.228 3.772 9 H 0.055 0.945 10 N -0.828 5.828 11 C -0.512 4.512 12 H 0.067 0.933 13 C 0.085 3.915 14 N -0.900 5.900 15 Si 0.865 3.135 16 H -0.297 1.297 17 H -0.303 1.303 18 H -0.191 1.191 19 H 0.064 0.936 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.145 0.855 25 H 0.341 0.659 26 H 0.303 0.697 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 10.409 7.821 13.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.217 4.217 5 C -0.070 4.070 6 N -0.182 5.182 7 C 0.001 3.999 8 C 0.118 3.882 9 H 0.073 0.927 10 N -0.356 5.356 11 C -0.550 4.550 12 H 0.085 0.915 13 C -0.119 4.119 14 N -0.537 5.537 15 Si 0.692 3.308 16 H -0.224 1.224 17 H -0.231 1.231 18 H -0.113 1.113 19 H 0.083 0.917 20 H 0.079 0.921 21 H 0.105 0.895 22 H 0.142 0.858 23 H 0.141 0.859 24 H 0.162 0.838 25 H 0.155 0.845 26 H 0.113 0.887 27 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.138 8.915 7.481 11.694 hybrid contribution -0.105 1.298 0.437 1.373 sum 1.033 10.213 7.918 12.964 Atomic orbital electron populations 1.20788 0.90671 1.03650 1.01869 1.20828 0.97648 0.93712 1.02103 1.21373 0.94153 0.97731 0.97728 1.21920 0.95218 0.99148 1.05390 1.22681 0.99918 0.88104 0.96286 1.67494 1.08352 1.30568 1.11739 1.22825 0.89736 0.97305 0.89995 1.18700 0.92440 0.82979 0.94113 0.92717 1.60087 1.23639 1.48333 1.03532 1.20595 1.35639 1.06376 0.92404 0.91530 1.24956 0.95006 0.96374 0.95593 1.69961 1.43626 1.18416 1.21739 0.87234 0.78260 0.77220 0.88126 1.22430 1.23057 1.11283 0.91691 0.92097 0.89455 0.85845 0.85886 0.83750 0.84508 0.88670 0.92804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 9.25 36.01 0.33 -1.46 15 2 C -0.14 -2.57 5.90 -104.48 -0.62 -3.18 15 3 C -0.08 -1.31 9.86 -39.28 -0.39 -1.69 15 4 C -0.20 -2.94 10.11 -39.44 -0.40 -3.34 15 5 C 0.09 1.49 11.18 -17.55 -0.20 1.29 15 6 N -0.47 -9.87 9.70 -9.47 -0.09 -9.97 15 7 C 0.14 3.01 5.65 -82.59 -0.47 2.54 15 8 C 0.23 5.32 2.00 -70.02 -0.14 5.18 15 9 H 0.06 1.25 5.35 -51.93 -0.28 0.97 15 10 N -0.83 -18.01 5.78 -6.65 -0.04 -18.05 15 11 C -0.51 -14.60 9.29 -34.44 -0.32 -14.92 15 12 H 0.07 2.14 7.98 -52.49 -0.42 1.72 15 13 C 0.08 2.48 5.47 -17.82 -0.10 2.38 15 14 N -0.90 -28.25 13.96 55.43 0.77 -27.47 15 15 Si 0.86 21.68 26.94 -169.99 -4.58 17.10 15 16 H -0.30 -7.42 7.11 56.52 0.40 -7.02 15 17 H -0.30 -7.85 7.11 56.52 0.40 -7.45 15 18 H -0.19 -4.45 5.17 56.52 0.29 -4.16 15 19 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.06 0.82 8.10 -51.93 -0.42 0.40 15 21 H 0.09 1.58 6.41 -51.93 -0.33 1.25 15 22 H 0.12 1.52 8.06 -52.48 -0.42 1.10 15 23 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 24 H 0.15 2.01 8.06 -52.48 -0.42 1.58 15 25 H 0.34 7.61 8.53 -39.29 -0.34 7.27 15 26 H 0.30 5.75 9.06 -39.29 -0.36 5.39 15 27 H 0.26 7.77 8.31 -40.82 -0.34 7.44 15 LS Contribution 230.53 15.07 3.47 3.47 Total: -1.00 -32.30 230.53 -5.83 -38.13 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -3.08 Total: 9.98 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: -2.29 Total: -13.19 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.64 Total: -55.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.58 Total: 17.10 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -32.30 -5.83 -38.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104517746.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.771 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds