Wall clock time and date at job start Mon Mar 30 2020 01:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38670 * 120.42291 * 2 1 4 4 C 1.38634 * 118.42226 * 180.24208 * 3 2 1 5 5 C 1.38220 * 119.16109 * 359.74716 * 4 3 2 6 6 N 1.31854 * 120.76492 * 0.02562 * 5 4 3 7 7 C 1.31891 * 121.72492 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.61701 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47060 * 165.00413 * 8 7 6 10 10 N 1.46901 * 109.46921 * 45.00232 * 8 7 6 11 11 C 1.50699 * 109.47269 * 285.00266 * 8 7 6 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31522 * 119.99730 * 179.97438 * 13 11 8 15 15 Si 1.86801 * 120.00223 * 0.02562 * 13 11 8 16 16 H 1.48501 * 109.46854 * 89.99533 * 15 13 11 17 17 H 1.48495 * 109.46995 * 209.99565 * 15 13 11 18 18 H 1.48503 * 109.46814 * 329.99605 * 15 13 11 19 19 H 1.08996 * 109.46891 * 270.25794 * 1 2 3 20 20 H 1.08998 * 109.46469 * 30.25771 * 1 2 3 21 21 H 1.08998 * 109.47246 * 150.25463 * 1 2 3 22 22 H 1.08003 * 120.79068 * 359.96638 * 3 2 1 23 23 H 1.07997 * 120.41697 * 179.73130 * 4 3 2 24 24 H 1.08003 * 119.62200 * 180.02562 * 5 4 3 25 25 H 1.00898 * 111.00245 * 299.99784 * 10 8 7 26 26 H 1.00904 * 111.00313 * 63.95601 * 10 8 7 27 27 H 0.96999 * 119.99784 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5947 1.1474 -0.0052 5 6 4.2257 -0.0824 -0.0048 6 7 3.5255 -1.1997 -0.0001 7 6 2.2066 -1.1916 0.0049 8 6 1.4539 -2.4972 0.0095 9 1 0.4134 -2.3157 0.2791 10 7 2.0614 -3.4092 0.9879 11 6 1.5164 -3.1180 -1.3622 12 1 2.0484 -2.6174 -2.1577 13 6 0.8953 -4.3255 -1.6013 14 7 0.9495 -4.8671 -2.7987 15 14 -0.0242 -5.1917 -0.2252 16 1 -1.4409 -4.7465 -0.2199 17 1 0.0325 -6.6600 -0.4396 18 1 0.6048 -4.8569 1.0777 19 1 -0.3633 0.0046 1.0276 20 1 -0.3632 0.8877 -0.5178 21 1 -0.3633 -0.8922 -0.5099 22 1 1.6891 2.1423 -0.0005 23 1 4.1736 2.0590 -0.0097 24 1 5.3047 -0.1288 -0.0083 25 1 3.0269 -3.5932 0.7598 26 1 1.9744 -3.0447 1.9248 27 1 0.5122 -5.7164 -2.9670 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104517746.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:17 Heat of formation + Delta-G solvation = 12.119317 kcal Electronic energy + Delta-G solvation = -11779.079431 eV Core-core repulsion = 9728.764093 eV Total energy + Delta-G solvation = -2050.315338 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.18024 -36.63859 -34.43510 -33.96805 -31.90890 -28.43070 -27.98786 -25.15988 -22.96305 -21.77512 -18.98155 -17.64279 -17.30250 -16.39832 -15.91288 -15.73926 -15.08613 -14.72825 -14.21102 -13.83262 -13.75837 -13.55001 -13.16299 -12.77067 -12.56472 -12.24647 -11.73532 -11.39392 -10.72601 -10.53020 -10.22183 -9.55404 -8.88254 -8.22690 -6.35655 0.31364 0.50286 1.52133 1.59477 1.96904 2.63001 2.96661 3.16099 3.62482 3.99290 4.04208 4.20389 4.23192 4.33278 4.65956 4.79821 4.82285 4.96333 5.05185 5.27743 5.33551 5.47908 5.53305 5.94752 6.15336 6.47623 6.76482 7.02407 7.30003 7.40664 8.91517 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.049160 B = 0.012564 C = 0.011984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.434686 B = 2228.095992 C = 2335.799553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.153 4.153 3 C -0.082 4.082 4 C -0.179 4.179 5 C 0.069 3.931 6 N -0.509 5.509 7 C 0.100 3.900 8 C 0.235 3.765 9 H 0.063 0.937 10 N -0.828 5.828 11 C -0.507 4.507 12 H 0.011 0.989 13 C 0.023 3.977 14 N -0.955 5.955 15 Si 0.933 3.067 16 H -0.292 1.292 17 H -0.315 1.315 18 H -0.159 1.159 19 H 0.087 0.913 20 H 0.086 0.914 21 H 0.055 0.945 22 H 0.164 0.836 23 H 0.167 0.833 24 H 0.171 0.829 25 H 0.337 0.663 26 H 0.324 0.676 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 12.614 10.003 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.156 4.156 3 C -0.107 4.107 4 C -0.198 4.198 5 C -0.089 4.089 6 N -0.219 5.219 7 C -0.039 4.039 8 C 0.124 3.876 9 H 0.081 0.919 10 N -0.357 5.357 11 C -0.546 4.546 12 H 0.029 0.971 13 C -0.175 4.175 14 N -0.595 5.595 15 Si 0.758 3.242 16 H -0.219 1.219 17 H -0.243 1.243 18 H -0.079 1.079 19 H 0.106 0.894 20 H 0.105 0.895 21 H 0.074 0.926 22 H 0.181 0.819 23 H 0.185 0.815 24 H 0.188 0.812 25 H 0.150 0.850 26 H 0.136 0.864 27 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.003 11.151 9.682 14.801 hybrid contribution 0.064 0.782 -0.306 0.842 sum 1.067 11.933 9.376 15.214 Atomic orbital electron populations 1.20802 0.89371 1.03349 1.03243 1.21108 0.98853 0.93809 1.01792 1.21845 0.94608 0.98215 0.96063 1.22405 0.95445 0.99877 1.02086 1.23230 1.01175 0.88194 0.96265 1.67349 1.08618 1.33029 1.12872 1.22459 0.90304 0.97324 0.93785 1.18370 0.93533 0.84316 0.91352 0.91902 1.59818 1.23210 1.48235 1.04436 1.20781 1.33847 1.05968 0.93989 0.97093 1.25955 0.96196 0.97330 0.98013 1.70119 1.45814 1.19207 1.24322 0.86236 0.76988 0.74821 0.86182 1.21899 1.24299 1.07936 0.89443 0.89503 0.92562 0.81851 0.81509 0.81237 0.84994 0.86365 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.27 9.25 71.24 0.66 -2.62 15 2 C -0.15 -5.29 5.90 -19.77 -0.12 -5.41 15 3 C -0.08 -2.21 9.86 22.47 0.22 -1.99 15 4 C -0.18 -4.60 10.11 22.36 0.23 -4.38 15 5 C 0.07 2.19 11.18 84.69 0.95 3.14 15 6 N -0.51 -21.06 9.70 -183.88 -1.78 -22.85 15 7 C 0.10 4.23 5.65 42.54 0.24 4.47 15 8 C 0.24 10.98 2.00 43.42 0.09 11.07 15 9 H 0.06 2.82 5.35 -2.39 -0.01 2.81 15 10 N -0.83 -35.16 5.78 -174.95 -1.01 -36.17 15 11 C -0.51 -30.05 9.29 25.60 0.24 -29.81 15 12 H 0.01 0.74 7.98 -2.91 -0.02 0.71 15 13 C 0.02 1.38 5.47 84.65 0.46 1.85 15 14 N -0.95 -62.51 13.96 21.45 0.30 -62.21 15 15 Si 0.93 45.46 26.94 68.60 1.85 47.31 15 16 H -0.29 -13.87 7.11 99.48 0.71 -13.16 15 17 H -0.31 -15.84 7.11 99.48 0.71 -15.14 15 18 H -0.16 -6.87 5.17 99.48 0.51 -6.36 15 19 H 0.09 2.16 8.14 -2.39 -0.02 2.14 15 20 H 0.09 2.07 8.10 -2.39 -0.02 2.05 15 21 H 0.06 2.01 6.41 -2.39 -0.02 1.99 15 22 H 0.16 3.09 8.06 -2.91 -0.02 3.07 15 23 H 0.17 2.83 8.06 -2.91 -0.02 2.80 15 24 H 0.17 4.30 8.06 -2.91 -0.02 4.28 15 25 H 0.34 14.97 8.53 -89.70 -0.77 14.21 15 26 H 0.32 11.64 9.06 -89.69 -0.81 10.83 15 27 H 0.26 16.20 8.31 -92.71 -0.77 15.43 15 Total: -1.00 -73.69 230.53 1.74 -71.96 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.58 Total: 25.65 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 2.96 Total: -23.69 kcal Atomic # 7 Polarization: -118.73 SS G_CDS: -2.50 Total: -121.22 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.85 Total: 47.31 kcal Total: -73.69 1.74 -71.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104517746.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.076 kcal (2) G-P(sol) polarization free energy of solvation -73.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds