Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38233 * 119.61845 * 2 1 4 4 C 1.38621 * 119.16095 * 179.70426 * 3 2 1 5 5 C 1.38674 * 118.42037 * 0.51553 * 4 3 2 6 6 C 1.50704 * 120.41847 * 179.77882 * 5 4 3 7 7 H 1.09001 * 109.47089 * 339.72237 * 6 5 4 8 8 N 1.46908 * 109.47074 * 219.72154 * 6 5 4 9 9 C 1.50702 * 109.46727 * 99.72548 * 6 5 4 10 10 H 1.07994 * 120.00455 * 5.57639 * 9 6 5 11 11 C 1.37878 * 119.99743 * 185.58346 * 9 6 5 12 12 N 1.31514 * 120.00006 * 194.90245 * 11 9 6 13 13 Si 1.86803 * 120.00250 * 14.89654 * 11 9 6 14 14 H 1.48496 * 109.47124 * 180.02562 * 13 11 9 15 15 H 1.48504 * 109.46700 * 60.00122 * 13 11 9 16 16 H 1.48504 * 109.47136 * 300.00283 * 13 11 9 17 17 C 1.38180 * 119.16367 * 359.50865 * 5 4 3 18 18 N 1.31848 * 119.61915 * 179.97438 * 2 1 3 19 19 H 1.09005 * 109.46368 * 270.02159 * 1 2 3 20 20 H 1.08996 * 109.47379 * 30.01736 * 1 2 3 21 21 H 1.08996 * 109.46892 * 150.02000 * 1 2 3 22 22 H 1.07995 * 120.41618 * 359.96010 * 3 2 1 23 23 H 1.08002 * 120.79060 * 180.27437 * 4 3 2 24 24 H 1.00897 * 110.99635 * 179.55312 * 8 6 5 25 25 H 1.00893 * 111.00112 * 303.50390 * 8 6 5 26 26 H 0.97003 * 120.00018 * 354.89228 * 12 11 9 27 27 H 1.08002 * 119.62167 * 180.25336 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1907 0.0062 5 6 4.2266 -0.0342 0.0013 6 6 5.7323 -0.0987 0.0027 7 1 6.1370 0.8505 -0.3486 8 7 6.1769 -1.1799 -0.8869 9 6 6.2222 -0.3665 1.4025 10 1 5.5146 -0.5681 2.1930 11 6 7.5739 -0.3540 1.6740 12 7 8.0235 -0.8660 2.7989 13 14 8.7668 0.3900 0.4439 14 1 10.1517 0.2792 0.9683 15 1 8.4304 1.8207 0.2313 16 1 8.6667 -0.3391 -0.8459 17 6 3.4767 -1.1947 0.0008 18 7 2.1587 -1.1462 0.0005 19 1 -0.3632 0.0004 1.0278 20 1 -0.3634 0.8898 -0.5141 21 1 -0.3633 -0.8901 -0.5135 22 1 1.6508 2.1373 -0.0006 23 1 4.1366 2.1140 0.0108 24 1 7.1839 -1.2389 -0.9088 25 1 5.7689 -2.0620 -0.6160 26 1 7.3999 -1.1850 3.4699 27 1 3.9755 -2.1526 0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104520005.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = 22.571394 kcal Electronic energy + Delta-G solvation = -11534.021331 eV Core-core repulsion = 9484.159229 eV Total energy + Delta-G solvation = -2049.862102 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.70112 -35.41939 -32.40418 -31.75673 -31.17016 -27.34221 -25.56079 -23.13448 -22.03852 -20.00518 -17.79774 -16.38145 -15.55466 -14.91416 -14.26463 -14.06812 -13.68247 -13.01562 -12.71825 -12.42432 -12.31904 -11.99076 -11.86620 -11.49951 -10.78623 -10.45584 -10.16429 -9.40576 -9.22786 -8.84478 -8.57603 -8.22290 -7.59542 -6.56402 -4.32747 1.73238 1.89954 3.23422 3.31186 3.47906 4.29601 4.37829 4.79086 5.08260 5.17372 5.45206 5.51493 5.71953 5.76964 5.82846 5.96436 6.10857 6.18923 6.37287 6.63455 6.70191 7.20085 7.31440 7.70527 8.11690 8.28133 8.41460 8.56548 8.73998 9.40574 10.73708 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064520 B = 0.010002 C = 0.009863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.867988 B = 2798.903411 C = 2838.203008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.090 3.910 3 C -0.173 4.173 4 C -0.084 4.084 5 C -0.071 4.071 6 C 0.215 3.785 7 H 0.046 0.954 8 N -0.857 5.857 9 C -0.628 4.628 10 H 0.056 0.944 11 C 0.031 3.969 12 N -0.896 5.896 13 Si 1.049 2.951 14 H -0.283 1.283 15 H -0.281 1.281 16 H -0.272 1.272 17 C 0.106 3.894 18 N -0.489 5.489 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.070 0.930 22 H 0.124 0.876 23 H 0.128 0.872 24 H 0.333 0.667 25 H 0.325 0.675 26 H 0.270 0.730 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.487 3.285 -6.057 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.048 4.048 3 C -0.193 4.193 4 C -0.110 4.110 5 C -0.073 4.073 6 C 0.105 3.895 7 H 0.063 0.937 8 N -0.389 5.389 9 C -0.668 4.668 10 H 0.074 0.926 11 C -0.176 4.176 12 N -0.529 5.529 13 Si 0.877 3.123 14 H -0.209 1.209 15 H -0.207 1.207 16 H -0.198 1.198 17 C -0.052 4.052 18 N -0.198 5.198 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.142 0.858 23 H 0.146 0.854 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.080 0.920 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.704 3.178 -6.923 10.834 hybrid contribution -0.669 0.222 1.439 1.603 sum -8.373 3.400 -5.484 10.571 Atomic orbital electron populations 1.20579 0.89737 1.02584 1.02295 1.21055 0.96435 0.88766 0.98532 1.21775 0.94850 0.98642 1.03994 1.21426 0.93898 0.98297 0.97380 1.21082 0.98445 0.93214 0.94589 1.18261 0.86487 0.92370 0.92421 0.93671 1.59848 1.13674 1.08748 1.56603 1.22619 0.94545 1.54798 0.94833 0.92563 1.25892 0.97375 0.93862 1.00437 1.70847 1.38279 1.35247 1.08572 0.83930 0.76243 0.77008 0.75078 1.20869 1.20747 1.19827 1.22407 0.88388 0.98563 0.95803 1.67424 1.10295 1.29295 1.12814 0.91236 0.91427 0.91097 0.85791 0.85397 0.85186 0.86326 0.92012 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 10.17 36.01 0.37 -0.83 15 2 C 0.09 1.55 6.78 -82.59 -0.56 1.00 15 3 C -0.17 -2.88 9.74 -39.44 -0.38 -3.27 15 4 C -0.08 -1.59 9.82 -39.28 -0.39 -1.98 15 5 C -0.07 -1.53 4.91 -104.48 -0.51 -2.04 15 6 C 0.21 5.01 2.50 -70.01 -0.18 4.83 15 7 H 0.05 1.06 6.74 -51.93 -0.35 0.71 15 8 N -0.86 -18.55 9.10 -6.64 -0.06 -18.61 15 9 C -0.63 -17.05 9.04 -34.44 -0.31 -17.36 15 10 H 0.06 1.69 7.99 -52.49 -0.42 1.27 15 11 C 0.03 0.86 5.40 -17.82 -0.10 0.76 15 12 N -0.90 -26.64 13.70 55.43 0.76 -25.88 15 13 Si 1.05 23.91 26.42 -169.99 -4.49 19.42 15 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 16 H -0.27 -5.63 5.63 56.52 0.32 -5.31 15 17 C 0.11 2.20 10.45 -17.55 -0.18 2.02 15 18 N -0.49 -9.68 10.27 -9.47 -0.10 -9.78 15 19 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 20 H 0.07 0.69 8.08 -51.93 -0.42 0.27 15 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.12 1.63 8.06 -52.49 -0.42 1.21 15 23 H 0.13 2.21 8.06 -52.49 -0.42 1.79 15 24 H 0.33 7.25 5.48 -39.29 -0.22 7.04 15 25 H 0.33 6.74 7.24 -39.30 -0.28 6.45 15 26 H 0.27 8.07 8.73 -40.82 -0.36 7.71 15 27 H 0.15 2.99 6.62 -52.49 -0.35 2.64 15 LS Contribution 231.43 15.07 3.49 3.49 Total: -1.00 -29.91 231.43 -5.61 -35.52 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -2.96 Total: 12.72 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -2.24 Total: -16.87 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.60 Total: -54.27 kcal Atomic # 14 Polarization: 23.91 SS G_CDS: -4.49 Total: 19.42 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -29.91 -5.61 -35.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104520005.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.087 kcal (2) G-P(sol) polarization free energy of solvation -29.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds