Wall clock time and date at job start Mon Mar 30 2020 01:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38233 * 119.61845 * 2 1 4 4 C 1.38621 * 119.16095 * 179.70426 * 3 2 1 5 5 C 1.38674 * 118.42037 * 0.51553 * 4 3 2 6 6 C 1.50704 * 120.41847 * 179.77882 * 5 4 3 7 7 H 1.09001 * 109.47089 * 339.72237 * 6 5 4 8 8 N 1.46908 * 109.47074 * 219.72154 * 6 5 4 9 9 C 1.50702 * 109.46727 * 99.72548 * 6 5 4 10 10 H 1.07994 * 120.00455 * 5.57639 * 9 6 5 11 11 C 1.37878 * 119.99743 * 185.58346 * 9 6 5 12 12 N 1.31514 * 120.00006 * 194.90245 * 11 9 6 13 13 Si 1.86803 * 120.00250 * 14.89654 * 11 9 6 14 14 H 1.48496 * 109.47124 * 180.02562 * 13 11 9 15 15 H 1.48504 * 109.46700 * 60.00122 * 13 11 9 16 16 H 1.48504 * 109.47136 * 300.00283 * 13 11 9 17 17 C 1.38180 * 119.16367 * 359.50865 * 5 4 3 18 18 N 1.31848 * 119.61915 * 179.97438 * 2 1 3 19 19 H 1.09005 * 109.46368 * 270.02159 * 1 2 3 20 20 H 1.08996 * 109.47379 * 30.01736 * 1 2 3 21 21 H 1.08996 * 109.46892 * 150.02000 * 1 2 3 22 22 H 1.07995 * 120.41618 * 359.96010 * 3 2 1 23 23 H 1.08002 * 120.79060 * 180.27437 * 4 3 2 24 24 H 1.00897 * 110.99635 * 179.55312 * 8 6 5 25 25 H 1.00893 * 111.00112 * 303.50390 * 8 6 5 26 26 H 0.97003 * 120.00018 * 354.89228 * 12 11 9 27 27 H 1.08002 * 119.62167 * 180.25336 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2017 0.0000 4 6 3.5764 1.1907 0.0062 5 6 4.2266 -0.0342 0.0013 6 6 5.7323 -0.0987 0.0027 7 1 6.1370 0.8505 -0.3486 8 7 6.1769 -1.1799 -0.8869 9 6 6.2222 -0.3665 1.4025 10 1 5.5146 -0.5681 2.1930 11 6 7.5739 -0.3540 1.6740 12 7 8.0235 -0.8660 2.7989 13 14 8.7668 0.3900 0.4439 14 1 10.1517 0.2792 0.9683 15 1 8.4304 1.8207 0.2313 16 1 8.6667 -0.3391 -0.8459 17 6 3.4767 -1.1947 0.0008 18 7 2.1587 -1.1462 0.0005 19 1 -0.3632 0.0004 1.0278 20 1 -0.3634 0.8898 -0.5141 21 1 -0.3633 -0.8901 -0.5135 22 1 1.6508 2.1373 -0.0006 23 1 4.1366 2.1140 0.0108 24 1 7.1839 -1.2389 -0.9088 25 1 5.7689 -2.0620 -0.6160 26 1 7.3999 -1.1850 3.4699 27 1 3.9755 -2.1526 0.0011 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104520005.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:46 Heat of formation + Delta-G solvation = 0.395368 kcal Electronic energy + Delta-G solvation = -11534.982955 eV Core-core repulsion = 9484.159229 eV Total energy + Delta-G solvation = -2050.823727 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.16567 -37.19760 -34.31677 -33.19082 -32.74710 -28.80169 -27.40284 -24.73470 -23.56010 -21.67989 -19.87740 -17.98267 -16.99988 -16.54651 -15.85191 -15.47632 -15.30188 -14.83092 -14.38401 -14.15407 -13.84803 -13.28540 -13.14291 -12.95960 -12.39144 -12.20755 -11.94160 -11.41570 -10.72960 -10.64475 -10.33290 -9.74244 -9.49637 -8.70528 -6.54928 0.28304 0.42266 1.42989 1.49731 1.69611 2.39530 2.90662 2.97201 3.46281 3.90892 3.91581 4.13895 4.23746 4.37892 4.64579 4.75633 4.76667 4.83155 5.01442 5.20987 5.27614 5.53752 5.69681 5.86514 5.91682 6.31295 6.47744 6.73789 7.10344 7.27743 8.50696 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.064520 B = 0.010002 C = 0.009863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.867988 B = 2798.903411 C = 2838.203008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.086 3.914 3 C -0.163 4.163 4 C -0.092 4.092 5 C -0.105 4.105 6 C 0.222 3.778 7 H 0.050 0.950 8 N -0.846 5.846 9 C -0.626 4.626 10 H 0.010 0.990 11 C -0.017 4.017 12 N -0.929 5.929 13 Si 1.091 2.909 14 H -0.289 1.289 15 H -0.263 1.263 16 H -0.238 1.238 17 C 0.089 3.911 18 N -0.508 5.508 19 H 0.082 0.918 20 H 0.100 0.900 21 H 0.072 0.928 22 H 0.169 0.831 23 H 0.144 0.856 24 H 0.333 0.667 25 H 0.329 0.671 26 H 0.252 0.748 27 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.758 4.863 -7.795 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.183 4.183 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.111 3.889 7 H 0.068 0.932 8 N -0.377 5.377 9 C -0.666 4.666 10 H 0.028 0.972 11 C -0.216 4.216 12 N -0.564 5.564 13 Si 0.911 3.089 14 H -0.215 1.215 15 H -0.188 1.188 16 H -0.163 1.163 17 C -0.068 4.068 18 N -0.218 5.218 19 H 0.101 0.899 20 H 0.119 0.881 21 H 0.091 0.909 22 H 0.186 0.814 23 H 0.162 0.838 24 H 0.148 0.852 25 H 0.141 0.859 26 H 0.061 0.939 27 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.005 4.738 -8.672 13.369 hybrid contribution -0.459 -0.266 2.030 2.098 sum -9.464 4.473 -6.642 12.397 Atomic orbital electron populations 1.20719 0.86200 1.04352 1.03638 1.21946 0.98788 0.88295 0.96217 1.22228 0.93937 1.00318 1.01792 1.21750 0.95396 0.97898 0.96803 1.21028 0.97451 0.94712 0.97581 1.18099 0.88148 0.92770 0.89905 0.93215 1.59799 1.13596 1.08706 1.55591 1.22756 0.93908 1.53958 0.95944 0.97182 1.27377 0.99702 0.93280 1.01269 1.70987 1.37931 1.37837 1.09620 0.83448 0.73614 0.77569 0.74259 1.21473 1.18796 1.16263 1.22350 0.89216 0.98306 0.96879 1.67477 1.09667 1.30962 1.13715 0.89916 0.88130 0.90946 0.81385 0.83845 0.85205 0.85913 0.93940 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.98 10.17 71.24 0.72 -1.25 15 2 C 0.09 2.74 6.78 42.56 0.29 3.02 15 3 C -0.16 -4.89 9.74 22.36 0.22 -4.67 15 4 C -0.09 -3.33 9.82 22.47 0.22 -3.11 15 5 C -0.11 -4.50 4.91 -19.77 -0.10 -4.59 15 6 C 0.22 10.25 2.50 43.42 0.11 10.35 15 7 H 0.05 2.26 6.74 -2.39 -0.02 2.24 15 8 N -0.85 -35.88 9.10 -174.93 -1.59 -37.47 15 9 C -0.63 -34.80 9.04 25.60 0.23 -34.57 15 10 H 0.01 0.62 7.99 -2.91 -0.02 0.60 15 11 C -0.02 -0.94 5.40 84.65 0.46 -0.49 15 12 N -0.93 -56.94 13.70 21.45 0.29 -56.64 15 13 Si 1.09 47.30 26.42 68.60 1.81 49.12 15 14 H -0.29 -12.77 7.11 99.48 0.71 -12.07 15 15 H -0.26 -10.61 7.11 99.48 0.71 -9.90 15 16 H -0.24 -8.98 5.63 99.48 0.56 -8.42 15 17 C 0.09 3.73 10.45 84.67 0.88 4.61 15 18 N -0.51 -19.69 10.27 -183.88 -1.89 -21.58 15 19 H 0.08 1.61 8.14 -2.38 -0.02 1.59 15 20 H 0.10 1.53 8.08 -2.39 -0.02 1.51 15 21 H 0.07 1.56 8.14 -2.39 -0.02 1.54 15 22 H 0.17 3.50 8.06 -2.91 -0.02 3.47 15 23 H 0.14 4.61 8.06 -2.91 -0.02 4.59 15 24 H 0.33 13.94 5.48 -89.70 -0.49 13.45 15 25 H 0.33 13.67 7.24 -89.70 -0.65 13.02 15 26 H 0.25 15.85 8.73 -92.71 -0.81 15.05 15 27 H 0.14 5.88 6.62 -2.91 -0.02 5.86 15 Total: -1.00 -66.28 231.43 1.52 -64.75 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.14 Total: 32.51 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.04 Total: -30.69 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -3.19 Total: -115.69 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.81 Total: 49.12 kcal Total: -66.28 1.52 -64.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104520005.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.150 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds