Wall clock time and date at job start Mon Mar 30 2020 02:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38215 * 120.41903 * 2 1 4 4 N 1.31854 * 120.76332 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.41518 * 180.02562 * 2 1 3 8 8 C 1.50699 * 120.79382 * 359.95301 * 7 2 1 9 9 H 1.09000 * 109.46972 * 325.00021 * 8 7 2 10 10 N 1.46905 * 109.47355 * 205.00311 * 8 7 2 11 11 C 1.50694 * 109.47196 * 85.00312 * 8 7 2 12 12 H 1.08004 * 119.99964 * 0.02562 * 11 8 7 13 13 C 1.37870 * 120.00294 * 179.97438 * 11 8 7 14 14 N 1.31523 * 120.00078 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00447 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47222 * 89.99831 * 15 13 11 17 17 H 1.48503 * 109.47461 * 210.00238 * 15 13 11 18 18 H 1.48505 * 109.46829 * 330.00013 * 15 13 11 19 19 H 1.08998 * 109.46832 * 89.99626 * 1 2 3 20 20 H 1.09003 * 109.47259 * 209.99666 * 1 2 3 21 21 H 1.08995 * 109.47077 * 329.99593 * 1 2 3 22 22 H 1.07994 * 119.62230 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 24 24 H 1.07996 * 120.41523 * 180.02562 * 6 5 4 25 25 H 1.00898 * 111.00052 * 176.04310 * 10 8 7 26 26 H 1.00900 * 110.99534 * 300.00012 * 10 8 7 27 27 H 0.96999 * 120.00219 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 2.2089 -1.1955 -0.0005 8 6 1.4831 -2.5162 -0.0001 9 1 0.5708 -2.4292 0.5900 10 7 2.3477 -3.5500 0.5847 11 6 1.1317 -2.8968 -1.4152 12 1 1.4069 -2.2475 -2.2332 13 6 0.4599 -4.0744 -1.6658 14 7 0.1253 -4.8654 -0.6698 15 14 0.0237 -4.5459 -3.4200 16 1 1.1306 -5.3419 -4.0085 17 1 -1.2219 -5.3544 -3.4201 18 1 -0.1844 -3.3160 -4.2258 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6676 2.1275 0.0004 23 1 5.3047 0.1285 -0.0023 24 1 4.1738 -2.0588 -0.0031 25 1 1.8609 -4.4309 0.6556 26 1 3.2008 -3.6498 0.0552 27 1 -0.3470 -5.6941 -0.8461 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104520626.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:03 Heat of formation + Delta-G solvation = 2.455718 kcal Electronic energy + Delta-G solvation = -11744.379581 eV Core-core repulsion = 9693.645198 eV Total energy + Delta-G solvation = -2050.734383 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.06980 -37.04103 -34.30566 -33.50748 -31.54236 -28.23483 -27.93923 -25.34952 -22.95430 -21.78135 -18.65599 -17.84579 -17.20426 -16.49097 -15.89639 -15.34228 -15.13836 -14.63113 -14.14594 -13.99308 -13.51458 -13.41888 -12.97579 -12.83161 -12.73622 -12.15273 -12.01907 -11.81821 -10.78848 -10.23058 -10.13808 -9.67063 -9.24823 -8.16711 -6.41392 0.36652 0.56827 1.35176 1.38537 1.47498 2.34167 3.01785 3.05893 3.71018 4.03685 4.13320 4.24775 4.28247 4.54166 4.76238 4.88728 4.93983 4.98070 5.24186 5.31168 5.42074 5.60256 5.85431 5.96912 6.05491 6.58975 6.86975 7.06344 7.15244 7.34463 8.78776 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045661 B = 0.011888 C = 0.011249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.062745 B = 2354.731678 C = 2488.491355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.153 4.153 3 C 0.087 3.913 4 N -0.514 5.514 5 C 0.079 3.921 6 C -0.170 4.170 7 C -0.022 4.022 8 C 0.244 3.756 9 H 0.028 0.972 10 N -0.845 5.845 11 C -0.552 4.552 12 H 0.042 0.958 13 C 0.027 3.973 14 N -0.913 5.913 15 Si 0.956 3.044 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.274 1.274 19 H 0.066 0.934 20 H 0.052 0.948 21 H 0.090 0.910 22 H 0.177 0.823 23 H 0.178 0.822 24 H 0.135 0.865 25 H 0.347 0.653 26 H 0.319 0.681 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 6.275 -0.092 6.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.156 4.156 3 C -0.070 4.070 4 N -0.223 5.223 5 C -0.077 4.077 6 C -0.190 4.190 7 C -0.030 4.030 8 C 0.134 3.866 9 H 0.046 0.954 10 N -0.374 5.374 11 C -0.592 4.592 12 H 0.060 0.940 13 C -0.173 4.173 14 N -0.553 5.553 15 Si 0.782 3.218 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.199 1.199 19 H 0.085 0.915 20 H 0.070 0.930 21 H 0.108 0.892 22 H 0.194 0.806 23 H 0.195 0.805 24 H 0.153 0.847 25 H 0.162 0.838 26 H 0.129 0.871 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.927 7.370 0.623 7.954 hybrid contribution -0.947 -1.978 -1.785 2.828 sum 1.980 5.391 -1.162 5.860 Atomic orbital electron populations 1.20614 0.89775 1.02707 1.02369 1.21000 0.98539 0.93585 1.02454 1.22896 0.89997 0.97624 0.96478 1.67642 1.08694 1.31703 1.14244 1.23015 1.01139 0.87249 0.96249 1.22055 0.94683 0.99933 1.02373 1.20789 0.94608 0.96141 0.91485 1.17832 0.90643 0.85701 0.92474 0.95415 1.59523 1.08815 1.13293 1.55769 1.21814 1.38114 1.05756 0.93471 0.93980 1.25661 0.94622 0.96208 1.00858 1.69824 1.40419 1.12776 1.32234 0.85586 0.77841 0.78084 0.80289 1.20106 1.20518 1.19934 0.91486 0.92956 0.89174 0.80571 0.80478 0.84709 0.83780 0.87079 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.37 9.66 71.24 0.69 -2.68 15 2 C -0.15 -5.89 5.90 -19.77 -0.12 -6.01 15 3 C 0.09 2.93 10.86 84.68 0.92 3.85 15 4 N -0.51 -18.07 10.36 -195.85 -2.03 -20.10 15 5 C 0.08 2.68 11.18 84.67 0.95 3.62 15 6 C -0.17 -6.54 9.34 22.36 0.21 -6.33 15 7 C -0.02 -0.95 5.02 -19.67 -0.10 -1.04 15 8 C 0.24 11.96 2.51 43.42 0.11 12.07 15 9 H 0.03 1.52 6.30 -2.39 -0.02 1.50 15 10 N -0.84 -39.69 8.81 -174.95 -1.54 -41.23 15 11 C -0.55 -29.03 8.71 25.60 0.22 -28.80 15 12 H 0.04 2.28 7.74 -2.91 -0.02 2.25 15 13 C 0.03 1.42 5.38 84.65 0.46 1.88 15 14 N -0.91 -49.11 11.54 21.45 0.25 -48.86 15 15 Si 0.96 41.91 29.54 68.60 2.03 43.94 15 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 15 17 H -0.28 -12.00 7.11 99.48 0.71 -11.29 15 18 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 19 H 0.07 2.33 8.14 -2.39 -0.02 2.31 15 20 H 0.05 2.04 6.16 -2.39 -0.01 2.03 15 21 H 0.09 2.39 8.09 -2.39 -0.02 2.37 15 22 H 0.18 4.63 8.06 -2.91 -0.02 4.61 15 23 H 0.18 4.60 8.06 -2.91 -0.02 4.58 15 24 H 0.14 4.89 6.43 -2.91 -0.02 4.87 15 25 H 0.35 17.52 7.08 -89.70 -0.63 16.88 15 26 H 0.32 14.07 7.29 -89.69 -0.65 13.41 15 27 H 0.27 13.77 8.31 -92.71 -0.77 13.00 15 Total: -1.00 -57.52 231.78 1.94 -55.57 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: -0.09 Total: 34.12 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 3.34 Total: -23.44 kcal Atomic # 7 Polarization: -106.87 SS G_CDS: -3.32 Total: -110.19 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -57.52 1.94 -55.57 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104520626.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.027 kcal (2) G-P(sol) polarization free energy of solvation -57.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds