Wall clock time and date at job start Mon Mar 30 2020 01:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 119.61481 * 2 1 4 4 C 1.38633 * 119.15790 * 179.97438 * 3 2 1 5 5 C 1.50709 * 120.78893 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46932 * 20.00733 * 5 4 3 7 7 N 1.46905 * 109.46826 * 140.00255 * 5 4 3 8 8 C 1.50700 * 109.47298 * 260.00386 * 5 4 3 9 9 H 1.08000 * 120.00108 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99709 * 179.97438 * 8 5 4 11 11 N 1.31513 * 120.00224 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99609 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.47018 * 90.00326 * 12 10 8 14 14 H 1.48497 * 109.46898 * 209.99821 * 12 10 8 15 15 H 1.48495 * 109.47344 * 330.00112 * 12 10 8 16 16 C 1.38664 * 118.42441 * 359.97438 * 4 3 2 17 17 C 1.38191 * 119.16224 * 0.02562 * 16 4 3 18 18 N 1.31852 * 119.62075 * 179.97438 * 2 1 3 19 19 H 1.09000 * 109.47135 * 89.99841 * 1 2 3 20 20 H 1.08998 * 109.46954 * 210.00110 * 1 2 3 21 21 H 1.09006 * 109.47365 * 329.99593 * 1 2 3 22 22 H 1.07995 * 120.42209 * 359.72823 * 3 2 1 23 23 H 1.00899 * 111.00029 * 296.04774 * 7 5 4 24 24 H 1.00899 * 110.99636 * 60.00245 * 7 5 4 25 25 H 0.96996 * 120.00411 * 180.02562 * 11 10 8 26 26 H 1.07999 * 120.42576 * 179.97438 * 16 4 3 27 27 H 1.08001 * 119.62001 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.2017 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.3581 2.4791 0.0000 6 1 3.7208 3.2909 0.3508 7 7 5.5188 2.3479 0.8908 8 6 4.8300 2.7798 -1.3993 9 1 4.5885 2.1051 -2.2073 10 6 5.5702 3.9162 -1.6478 11 7 5.8648 4.7374 -0.6638 12 14 6.1558 4.2884 -3.3822 13 1 5.1321 5.1015 -4.0864 14 1 7.4326 5.0443 -3.3219 15 1 6.3684 3.0155 -4.1168 16 6 4.2266 -0.0341 0.0016 17 6 3.4766 -1.1947 0.0016 18 7 2.1587 -1.1462 0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5139 22 1 1.6507 2.1373 -0.0044 23 1 5.2272 2.2101 1.8468 24 1 6.1255 1.6013 0.5865 25 1 6.3852 5.5371 -0.8387 26 1 5.3056 -0.0804 0.0016 27 1 3.9754 -2.1526 0.0020 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104662333.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:55 Heat of formation + Delta-G solvation = 26.139513 kcal Electronic energy + Delta-G solvation = -11516.508773 eV Core-core repulsion = 9466.801396 eV Total energy + Delta-G solvation = -2049.707377 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.66442 -35.19812 -32.31904 -31.87714 -30.15425 -27.27069 -26.05692 -23.12885 -22.39811 -19.68015 -16.57552 -15.85884 -15.69051 -14.87019 -14.44911 -14.03917 -13.93192 -12.77522 -12.69494 -12.43510 -12.07906 -11.98822 -11.53476 -10.96294 -10.83032 -10.66785 -10.09715 -9.49561 -8.97485 -8.59000 -8.45762 -8.38354 -7.19343 -5.95276 -4.11157 1.69379 1.99007 3.29855 3.36991 3.40272 4.33082 4.47515 4.76120 5.22479 5.32622 5.48906 5.72434 5.78677 5.83141 5.96317 5.98960 6.20114 6.31400 6.38810 6.81327 6.88250 7.34787 7.43000 7.82697 8.07788 8.50772 8.53412 8.90716 9.05065 9.58035 11.09153 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048179 B = 0.010275 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.022747 B = 2724.325399 C = 2833.597680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.112 3.888 3 C -0.173 4.173 4 C -0.029 4.029 5 C 0.252 3.748 6 H 0.050 0.950 7 N -0.808 5.808 8 C -0.534 4.534 9 H 0.053 0.947 10 C 0.085 3.915 11 N -0.845 5.845 12 Si 0.887 3.113 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.180 4.180 17 C 0.091 3.909 18 N -0.508 5.508 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.070 0.930 22 H 0.127 0.873 23 H 0.299 0.701 24 H 0.319 0.681 25 H 0.257 0.743 26 H 0.127 0.873 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.409 -6.774 1.763 8.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.025 4.025 3 C -0.194 4.194 4 C -0.040 4.040 5 C 0.143 3.857 6 H 0.068 0.932 7 N -0.333 5.333 8 C -0.572 4.572 9 H 0.072 0.928 10 C -0.122 4.122 11 N -0.480 5.480 12 Si 0.715 3.285 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.200 1.200 16 C -0.201 4.201 17 C -0.066 4.066 18 N -0.219 5.219 19 H 0.090 0.910 20 H 0.088 0.912 21 H 0.089 0.911 22 H 0.145 0.855 23 H 0.109 0.891 24 H 0.131 0.869 25 H 0.067 0.933 26 H 0.145 0.855 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.582 -6.601 1.604 8.792 hybrid contribution 0.585 0.043 -0.848 1.031 sum -4.997 -6.557 0.756 8.279 Atomic orbital electron populations 1.20624 0.89711 1.02658 1.02500 1.21163 0.96426 0.88801 0.96114 1.21882 0.94982 0.98560 1.03946 1.22298 0.94393 0.99127 0.88149 1.18274 0.87203 0.86278 0.93977 0.93197 1.59200 1.19977 1.51404 1.02737 1.20765 1.36793 1.08207 0.91476 0.92845 1.24939 0.95196 0.95785 0.96316 1.70097 1.36048 1.11443 1.30364 0.86703 0.78267 0.78424 0.85149 1.20661 1.21131 1.19974 1.21923 1.01264 0.93079 1.03789 1.22517 0.89577 0.97956 0.96524 1.67385 1.10022 1.29412 1.15086 0.90995 0.91191 0.91122 0.85459 0.89083 0.86859 0.93290 0.85503 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.31 10.17 36.00 0.37 -0.94 15 2 C 0.11 1.99 6.78 -82.59 -0.56 1.43 15 3 C -0.17 -3.35 9.41 -39.44 -0.37 -3.72 15 4 C -0.03 -0.62 4.91 -104.31 -0.51 -1.13 15 5 C 0.25 6.13 2.88 -70.01 -0.20 5.93 15 6 H 0.05 1.32 8.04 -51.93 -0.42 0.91 15 7 N -0.81 -18.50 8.38 -6.64 -0.06 -18.56 15 8 C -0.53 -14.47 8.71 -34.44 -0.30 -14.77 15 9 H 0.05 1.47 7.74 -52.49 -0.41 1.07 15 10 C 0.08 2.34 5.39 -17.82 -0.10 2.24 15 11 N -0.85 -24.21 12.77 55.43 0.71 -23.50 15 12 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 15 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 14 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 15 H -0.27 -6.52 7.11 56.52 0.40 -6.11 15 16 C -0.18 -3.43 9.38 -39.44 -0.37 -3.80 15 17 C 0.09 1.59 11.18 -17.55 -0.20 1.39 15 18 N -0.51 -9.37 10.27 -9.47 -0.10 -9.47 15 19 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 20 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 21 H 0.07 0.82 8.08 -51.93 -0.42 0.40 15 22 H 0.13 2.30 8.06 -52.49 -0.42 1.88 15 23 H 0.30 6.14 9.06 -39.29 -0.36 5.78 15 24 H 0.32 6.92 7.43 -39.29 -0.29 6.62 15 25 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 26 H 0.13 2.28 6.78 -52.49 -0.36 1.92 15 27 H 0.14 2.04 8.06 -52.49 -0.42 1.62 15 LS Contribution 238.94 15.07 3.60 3.60 Total: -1.00 -29.88 238.94 -6.18 -36.06 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -3.07 Total: 9.14 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.24 Total: -13.36 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.55 Total: -51.53 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.88 -6.18 -36.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104662333.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.195 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds