Wall clock time and date at job start Mon Mar 30 2020 01:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38225 * 119.61481 * 2 1 4 4 C 1.38633 * 119.15790 * 179.97438 * 3 2 1 5 5 C 1.50709 * 120.78893 * 179.97438 * 4 3 2 6 6 H 1.09003 * 109.46932 * 20.00733 * 5 4 3 7 7 N 1.46905 * 109.46826 * 140.00255 * 5 4 3 8 8 C 1.50700 * 109.47298 * 260.00386 * 5 4 3 9 9 H 1.08000 * 120.00108 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99709 * 179.97438 * 8 5 4 11 11 N 1.31513 * 120.00224 * 0.02562 * 10 8 5 12 12 Si 1.86798 * 119.99609 * 179.97438 * 10 8 5 13 13 H 1.48498 * 109.47018 * 90.00326 * 12 10 8 14 14 H 1.48497 * 109.46898 * 209.99821 * 12 10 8 15 15 H 1.48495 * 109.47344 * 330.00112 * 12 10 8 16 16 C 1.38664 * 118.42441 * 359.97438 * 4 3 2 17 17 C 1.38191 * 119.16224 * 0.02562 * 16 4 3 18 18 N 1.31852 * 119.62075 * 179.97438 * 2 1 3 19 19 H 1.09000 * 109.47135 * 89.99841 * 1 2 3 20 20 H 1.08998 * 109.46954 * 210.00110 * 1 2 3 21 21 H 1.09006 * 109.47365 * 329.99593 * 1 2 3 22 22 H 1.07995 * 120.42209 * 359.72823 * 3 2 1 23 23 H 1.00899 * 111.00029 * 296.04774 * 7 5 4 24 24 H 1.00899 * 110.99636 * 60.00245 * 7 5 4 25 25 H 0.96996 * 120.00411 * 180.02562 * 11 10 8 26 26 H 1.07999 * 120.42576 * 179.97438 * 16 4 3 27 27 H 1.08001 * 119.62001 * 179.97438 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1900 1.2017 0.0000 4 6 3.5763 1.1906 0.0005 5 6 4.3581 2.4791 0.0000 6 1 3.7208 3.2909 0.3508 7 7 5.5188 2.3479 0.8908 8 6 4.8300 2.7798 -1.3993 9 1 4.5885 2.1051 -2.2073 10 6 5.5702 3.9162 -1.6478 11 7 5.8648 4.7374 -0.6638 12 14 6.1558 4.2884 -3.3822 13 1 5.1321 5.1015 -4.0864 14 1 7.4326 5.0443 -3.3219 15 1 6.3684 3.0155 -4.1168 16 6 4.2266 -0.0341 0.0016 17 6 3.4766 -1.1947 0.0016 18 7 2.1587 -1.1462 0.0005 19 1 -0.3633 0.0000 -1.0277 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5139 22 1 1.6507 2.1373 -0.0044 23 1 5.2272 2.2101 1.8468 24 1 6.1255 1.6013 0.5865 25 1 6.3852 5.5371 -0.8387 26 1 5.3056 -0.0804 0.0016 27 1 3.9754 -2.1526 0.0020 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104662333.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:54 Heat of formation + Delta-G solvation = 5.425458 kcal Electronic energy + Delta-G solvation = -11517.407002 eV Core-core repulsion = 9466.801396 eV Total energy + Delta-G solvation = -2050.605606 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11967 -36.97521 -34.05248 -33.43409 -31.84123 -28.63119 -27.96714 -24.86219 -23.87600 -21.30940 -18.58265 -17.38480 -17.24094 -16.59473 -16.09565 -15.79849 -15.29709 -14.47253 -14.24494 -14.09594 -13.44808 -13.24507 -13.06355 -12.79105 -12.68083 -12.30967 -11.99986 -11.45125 -10.60336 -10.45727 -10.21253 -9.77786 -8.98935 -8.03783 -6.26172 0.27221 0.46506 1.41514 1.43212 1.52450 2.43369 2.94388 3.20625 3.49921 3.93306 4.06022 4.25338 4.35514 4.43105 4.69059 4.77045 4.80958 4.87535 5.13878 5.22222 5.31927 5.66824 5.72336 5.89794 6.09434 6.57715 7.02909 7.09674 7.18762 7.46776 8.99952 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.048179 B = 0.010275 C = 0.009879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.022747 B = 2724.325399 C = 2833.597680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.113 3.887 3 C -0.189 4.189 4 C -0.051 4.051 5 C 0.259 3.741 6 H 0.017 0.983 7 N -0.817 5.817 8 C -0.547 4.547 9 H 0.043 0.957 10 C 0.039 3.961 11 N -0.877 5.877 12 Si 0.950 3.050 13 H -0.276 1.276 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.188 4.188 17 C 0.096 3.904 18 N -0.516 5.516 19 H 0.085 0.915 20 H 0.082 0.918 21 H 0.087 0.913 22 H 0.131 0.869 23 H 0.312 0.688 24 H 0.326 0.674 25 H 0.258 0.742 26 H 0.133 0.867 27 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.945 -7.989 1.260 10.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C -0.209 4.209 4 C -0.061 4.061 5 C 0.148 3.852 6 H 0.035 0.965 7 N -0.344 5.344 8 C -0.585 4.585 9 H 0.061 0.939 10 C -0.166 4.166 11 N -0.512 5.512 12 Si 0.775 3.225 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.197 1.197 16 C -0.208 4.208 17 C -0.060 4.060 18 N -0.227 5.227 19 H 0.103 0.897 20 H 0.100 0.900 21 H 0.106 0.894 22 H 0.148 0.852 23 H 0.123 0.877 24 H 0.139 0.861 25 H 0.067 0.933 26 H 0.151 0.849 27 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -6.128 -7.826 1.102 10.000 hybrid contribution 0.704 0.367 -0.654 1.029 sum -5.423 -7.459 0.448 9.233 Atomic orbital electron populations 1.20734 0.86594 1.04159 1.03762 1.21753 0.98490 0.87884 0.94282 1.22023 0.94528 0.99676 1.04675 1.22025 0.95159 0.98442 0.90503 1.17904 0.87339 0.87139 0.92777 0.96490 1.58999 1.19970 1.52017 1.03415 1.21028 1.36718 1.08111 0.92681 0.93876 1.25650 0.95383 0.95666 0.99876 1.70210 1.36888 1.11878 1.32260 0.85718 0.77823 0.78157 0.80765 1.20143 1.20738 1.19725 1.22018 1.01748 0.92886 1.04160 1.23052 0.89413 0.98839 0.94664 1.67541 1.10425 1.29530 1.15252 0.89675 0.89962 0.89405 0.85156 0.87659 0.86123 0.93331 0.84892 0.80234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 10.17 71.23 0.72 -1.57 15 2 C 0.11 3.80 6.78 42.55 0.29 4.09 15 3 C -0.19 -7.19 9.41 22.36 0.21 -6.98 15 4 C -0.05 -2.15 4.91 -19.67 -0.10 -2.25 15 5 C 0.26 12.79 2.88 43.42 0.13 12.91 15 6 H 0.02 0.94 8.04 -2.39 -0.02 0.93 15 7 N -0.82 -37.79 8.38 -174.93 -1.47 -39.26 15 8 C -0.55 -29.97 8.71 25.60 0.22 -29.74 15 9 H 0.04 2.39 7.74 -2.91 -0.02 2.37 15 10 C 0.04 2.13 5.39 84.66 0.46 2.58 15 11 N -0.88 -50.77 12.77 21.45 0.27 -50.50 15 12 Si 0.95 43.45 29.54 68.60 2.03 45.47 15 13 H -0.28 -12.31 7.11 99.48 0.71 -11.60 15 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 16 C -0.19 -6.94 9.38 22.36 0.21 -6.73 15 17 C 0.10 3.15 11.18 84.67 0.95 4.10 15 18 N -0.52 -17.80 10.27 -183.89 -1.89 -19.69 15 19 H 0.08 1.86 8.14 -2.39 -0.02 1.85 15 20 H 0.08 1.80 8.14 -2.39 -0.02 1.78 15 21 H 0.09 1.81 8.08 -2.38 -0.02 1.79 15 22 H 0.13 4.74 8.06 -2.91 -0.02 4.72 15 23 H 0.31 12.91 9.06 -89.69 -0.81 12.10 15 24 H 0.33 14.14 7.43 -89.69 -0.67 13.48 15 25 H 0.26 14.22 8.31 -92.71 -0.77 13.45 15 26 H 0.13 4.64 6.78 -2.91 -0.02 4.62 15 27 H 0.18 4.46 8.06 -2.91 -0.02 4.44 15 Total: -1.00 -62.87 238.94 1.74 -61.14 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: -0.30 Total: 26.43 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 3.09 Total: -23.60 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -3.08 Total: -109.44 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -62.87 1.74 -61.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104662333.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.560 kcal (2) G-P(sol) polarization free energy of solvation -62.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds