Wall clock time and date at job start Mon Mar 30 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38677 * 120.41606 * 2 1 4 4 C 1.38623 * 118.42081 * 179.97438 * 3 2 1 5 5 C 1.38230 * 119.16107 * 0.02562 * 4 3 2 6 6 N 1.31850 * 120.76205 * 359.72420 * 5 4 3 7 7 C 1.31884 * 121.72606 * 0.56252 * 6 5 4 8 8 C 1.50704 * 119.61688 * 179.70875 * 7 6 5 9 9 H 1.08999 * 109.46949 * 195.05063 * 8 7 6 10 10 N 1.46897 * 109.47442 * 315.05379 * 8 7 6 11 11 C 1.50704 * 109.46886 * 75.05207 * 8 7 6 12 12 H 1.08001 * 119.99873 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99599 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00453 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99503 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47025 * 60.00636 * 15 13 11 17 17 H 1.48504 * 109.47272 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47549 * 300.00239 * 15 13 11 19 19 H 1.09003 * 109.47320 * 264.22957 * 1 2 3 20 20 H 1.09000 * 109.47649 * 24.23683 * 1 2 3 21 21 H 1.09009 * 109.46853 * 144.23367 * 1 2 3 22 22 H 1.07997 * 120.78552 * 359.97438 * 3 2 1 23 23 H 1.07999 * 120.42172 * 180.02562 * 4 3 2 24 24 H 1.07997 * 119.61745 * 179.97438 * 5 4 3 25 25 H 1.00900 * 111.00108 * 296.04612 * 10 8 7 26 26 H 1.00911 * 110.99833 * 59.99752 * 10 8 7 27 27 H 0.96997 * 119.99921 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1959 0.0000 4 6 3.5945 1.1477 0.0005 5 6 4.2256 -0.0822 0.0005 6 7 3.5255 -1.1994 0.0055 7 6 2.2067 -1.1915 -0.0005 8 6 1.4541 -2.4972 -0.0011 9 1 0.4140 -2.3169 -0.2730 10 7 2.0631 -3.4130 -0.9748 11 6 1.5146 -3.1125 1.3733 12 1 2.0447 -2.6083 2.1678 13 6 0.8924 -4.3185 1.6166 14 7 0.2465 -4.9323 0.6493 15 14 0.9668 -5.0809 3.3204 16 1 0.3511 -4.1547 4.3044 17 1 0.2253 -6.3675 3.3198 18 1 2.3835 -5.3268 3.6912 19 1 -0.3634 -0.1033 1.0225 20 1 -0.3634 0.9370 -0.4219 21 1 -0.3633 -0.8339 -0.6007 22 1 1.6888 2.1423 -0.0004 23 1 4.1734 2.0593 0.0010 24 1 5.3046 -0.1284 0.0005 25 1 1.9774 -3.0523 -1.9132 26 1 3.0283 -3.5961 -0.7444 27 1 -0.1909 -5.7809 0.8204 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104668666.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:20 Heat of formation + Delta-G solvation = 8.808984 kcal Electronic energy + Delta-G solvation = -11728.494179 eV Core-core repulsion = 9678.035294 eV Total energy + Delta-G solvation = -2050.458885 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11476 -36.43320 -34.40020 -33.68364 -31.68235 -28.26815 -27.83479 -25.20236 -22.94133 -21.88999 -18.57892 -17.60336 -17.16933 -16.40991 -15.85057 -15.63290 -15.10279 -14.37100 -14.25018 -13.80287 -13.60410 -13.45920 -13.08556 -12.77843 -12.63836 -12.35014 -11.79237 -11.22561 -10.54726 -10.48883 -10.20677 -9.54381 -8.86344 -7.98106 -6.17851 0.35746 0.53311 1.41505 1.43665 1.50857 2.46179 3.03257 3.25546 3.68483 4.03859 4.09809 4.24385 4.28685 4.50982 4.67512 4.81949 4.85659 5.04758 5.20948 5.28916 5.43169 5.57989 5.73810 5.97756 6.18078 6.62665 7.08446 7.23154 7.37947 7.52131 9.05471 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045222 B = 0.011720 C = 0.011446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.022904 B = 2388.432697 C = 2445.645040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.157 4.157 3 C -0.081 4.081 4 C -0.181 4.181 5 C 0.069 3.931 6 N -0.511 5.511 7 C 0.096 3.904 8 C 0.264 3.736 9 H 0.041 0.959 10 N -0.813 5.813 11 C -0.534 4.534 12 H 0.032 0.968 13 C 0.037 3.963 14 N -0.878 5.878 15 Si 0.946 3.054 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.280 1.280 19 H 0.065 0.935 20 H 0.092 0.908 21 H 0.057 0.943 22 H 0.163 0.837 23 H 0.168 0.832 24 H 0.171 0.829 25 H 0.304 0.696 26 H 0.324 0.676 27 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 12.136 -1.415 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.159 4.159 3 C -0.106 4.106 4 C -0.201 4.201 5 C -0.089 4.089 6 N -0.220 5.220 7 C -0.043 4.043 8 C 0.154 3.846 9 H 0.059 0.941 10 N -0.338 5.338 11 C -0.573 4.573 12 H 0.050 0.950 13 C -0.166 4.166 14 N -0.514 5.514 15 Si 0.772 3.228 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.205 1.205 19 H 0.084 0.916 20 H 0.110 0.890 21 H 0.075 0.925 22 H 0.181 0.819 23 H 0.185 0.815 24 H 0.188 0.812 25 H 0.114 0.886 26 H 0.136 0.864 27 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.822 10.613 -1.225 11.050 hybrid contribution 0.343 0.826 0.672 1.119 sum 3.165 11.439 -0.553 11.882 Atomic orbital electron populations 1.20705 0.89708 1.03013 1.02433 1.21086 0.98634 0.93937 1.02264 1.21837 0.94681 0.98032 0.96093 1.22384 0.95320 0.99884 1.02512 1.23267 1.01175 0.88235 0.96180 1.67392 1.08596 1.32950 1.13060 1.22917 0.90364 0.98077 0.92954 1.18035 0.92004 0.82582 0.91983 0.94141 1.59126 1.21704 1.50037 1.02919 1.20878 1.35166 1.06686 0.94618 0.94954 1.25604 0.94386 0.97090 0.99543 1.70193 1.32946 1.15687 1.32559 0.85837 0.77923 0.77942 0.81088 1.19679 1.20463 1.20547 0.91622 0.88975 0.92464 0.81930 0.81479 0.81165 0.88571 0.86375 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.36 9.41 71.24 0.67 -2.69 15 2 C -0.16 -5.81 5.90 -19.77 -0.12 -5.93 15 3 C -0.08 -2.31 9.84 22.47 0.22 -2.09 15 4 C -0.18 -4.85 10.11 22.36 0.23 -4.63 15 5 C 0.07 2.26 11.18 84.69 0.95 3.21 15 6 N -0.51 -21.96 9.70 -183.89 -1.78 -23.75 15 7 C 0.10 4.31 5.65 42.54 0.24 4.55 15 8 C 0.26 13.81 2.71 43.43 0.12 13.93 15 9 H 0.04 2.24 5.60 -2.39 -0.01 2.22 15 10 N -0.81 -41.62 8.49 -174.95 -1.48 -43.11 15 11 C -0.53 -30.96 8.71 25.60 0.22 -30.73 15 12 H 0.03 1.93 7.74 -2.91 -0.02 1.91 15 13 C 0.04 2.15 5.39 84.65 0.46 2.61 15 14 N -0.88 -52.42 12.77 21.45 0.27 -52.14 15 15 Si 0.95 45.30 29.54 68.60 2.03 47.32 15 16 H -0.27 -12.56 7.11 99.48 0.71 -11.86 15 17 H -0.28 -12.92 7.11 99.48 0.71 -12.21 15 18 H -0.28 -13.38 7.11 99.48 0.71 -12.67 15 19 H 0.07 2.24 8.14 -2.39 -0.02 2.22 15 20 H 0.09 2.26 8.06 -2.39 -0.02 2.24 15 21 H 0.06 2.11 6.21 -2.38 -0.01 2.10 15 22 H 0.16 3.30 8.06 -2.91 -0.02 3.28 15 23 H 0.17 2.94 8.06 -2.91 -0.02 2.92 15 24 H 0.17 4.40 8.06 -2.91 -0.02 4.38 15 25 H 0.30 14.05 9.06 -89.69 -0.81 13.24 15 26 H 0.32 16.76 8.53 -89.69 -0.77 15.99 15 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 15 Total: -1.00 -67.47 236.55 1.63 -65.84 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -0.39 Total: 27.61 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: 2.99 Total: -21.77 kcal Atomic # 7 Polarization: -116.00 SS G_CDS: -2.99 Total: -119.00 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -67.47 1.63 -65.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104668666.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.645 kcal (2) G-P(sol) polarization free energy of solvation -67.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds