Wall clock time and date at job start Mon Mar 30 2020 02:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38215 * 120.41903 * 2 1 4 4 N 1.31854 * 120.76332 * 180.02562 * 3 2 1 5 5 C 1.31888 * 121.72838 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76199 * 0.02562 * 5 4 3 7 7 C 1.38628 * 120.41518 * 180.02562 * 2 1 3 8 8 C 1.50700 * 120.79381 * 359.97438 * 7 2 1 9 9 H 1.08993 * 109.47153 * 40.00370 * 8 7 2 10 10 N 1.46904 * 109.46976 * 160.00258 * 8 7 2 11 11 C 1.50701 * 109.47053 * 280.00019 * 8 7 2 12 12 H 1.07997 * 120.00104 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00045 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00227 * 0.02562 * 13 11 8 15 15 Si 1.86807 * 120.00241 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.47126 * 59.99938 * 15 13 11 17 17 H 1.48494 * 109.47046 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46953 * 300.00067 * 15 13 11 19 19 H 1.08998 * 109.46832 * 89.99626 * 1 2 3 20 20 H 1.09003 * 109.47259 * 209.99666 * 1 2 3 21 21 H 1.08995 * 109.47077 * 329.99593 * 1 2 3 22 22 H 1.07994 * 119.62230 * 0.02562 * 3 2 1 23 23 H 1.07999 * 119.61890 * 179.97438 * 5 4 3 24 24 H 1.07996 * 120.41523 * 180.02562 * 6 5 4 25 25 H 1.00899 * 111.00138 * 60.00331 * 10 8 7 26 26 H 1.00899 * 110.99671 * 183.95153 * 10 8 7 27 27 H 0.97002 * 120.00799 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1919 0.0000 4 7 3.5254 1.1998 -0.0005 5 6 4.2257 0.0822 -0.0015 6 6 3.5948 -1.1472 -0.0026 7 6 2.2089 -1.1955 -0.0005 8 6 1.4831 -2.5162 -0.0005 9 1 0.6180 -2.4554 -0.6608 10 7 2.3877 -3.5721 -0.4748 11 6 1.0255 -2.8379 1.3988 12 1 1.2385 -2.1542 2.2072 13 6 0.3339 -4.0046 1.6468 14 7 0.0741 -4.8370 0.6624 15 14 -0.2340 -4.4031 3.3813 16 1 -1.1482 -3.3354 3.8604 17 1 -0.9490 -5.7045 3.3813 18 1 0.9445 -4.4863 4.2811 19 1 -0.3633 0.0001 -1.0277 20 1 -0.3634 -0.8900 0.5138 21 1 -0.3633 0.8899 0.5139 22 1 1.6676 2.1275 0.0004 23 1 5.3047 0.1285 -0.0023 24 1 4.1738 -2.0588 -0.0031 25 1 3.1983 -3.6484 0.1212 26 1 1.9062 -4.4560 -0.5452 27 1 -0.4122 -5.6580 0.8369 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104674668.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:05 Heat of formation + Delta-G solvation = 19.720464 kcal Electronic energy + Delta-G solvation = -11752.617352 eV Core-core repulsion = 9702.631625 eV Total energy + Delta-G solvation = -2049.985728 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56082 -35.25939 -32.61829 -31.80473 -29.85402 -26.54248 -26.24771 -23.56657 -21.42390 -20.13027 -16.65615 -16.18236 -15.68035 -14.63917 -14.38546 -13.66844 -13.51526 -12.80483 -12.65510 -12.25910 -12.07787 -11.64543 -11.26397 -11.03743 -10.96862 -10.56385 -10.21417 -9.97226 -8.86094 -8.70446 -8.47198 -8.18728 -7.32917 -6.19847 -4.36868 1.83580 2.13301 3.17830 3.23507 3.26741 4.23153 4.55293 5.02257 5.05986 5.48594 5.68917 5.75744 5.78319 6.13210 6.25454 6.38992 6.46037 6.50413 6.84163 6.95671 7.08997 7.45921 7.61125 7.63876 7.96330 8.55021 8.61997 8.81397 9.00175 9.35171 10.78103 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.045908 B = 0.012017 C = 0.011193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.768394 B = 2329.457330 C = 2501.007901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.138 4.138 3 C 0.081 3.919 4 N -0.507 5.507 5 C 0.074 3.926 6 C -0.162 4.162 7 C 0.008 3.992 8 C 0.240 3.760 9 H 0.055 0.945 10 N -0.852 5.852 11 C -0.544 4.544 12 H 0.055 0.945 13 C 0.069 3.931 14 N -0.891 5.891 15 Si 0.898 3.102 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.276 1.276 19 H 0.061 0.939 20 H 0.092 0.908 21 H 0.055 0.945 22 H 0.142 0.858 23 H 0.143 0.857 24 H 0.131 0.869 25 H 0.312 0.688 26 H 0.357 0.643 27 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.058 5.048 -0.355 5.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.140 4.140 3 C -0.075 4.075 4 N -0.216 5.216 5 C -0.082 4.082 6 C -0.182 4.182 7 C 0.000 4.000 8 C 0.130 3.870 9 H 0.073 0.927 10 N -0.382 5.382 11 C -0.583 4.583 12 H 0.074 0.926 13 C -0.135 4.135 14 N -0.530 5.530 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.202 1.202 19 H 0.080 0.920 20 H 0.111 0.889 21 H 0.074 0.926 22 H 0.160 0.840 23 H 0.160 0.840 24 H 0.149 0.851 25 H 0.122 0.878 26 H 0.174 0.826 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.461 6.099 -1.083 6.665 hybrid contribution -0.959 -1.557 1.941 2.667 sum 1.502 4.542 0.858 4.860 Atomic orbital electron populations 1.20758 0.90790 1.03638 1.01765 1.20737 0.97597 0.93515 1.02171 1.22412 0.90029 0.96973 0.98133 1.67519 1.08338 1.31529 1.14235 1.22519 0.99488 0.88261 0.97938 1.21949 0.95400 0.98783 1.02070 1.20851 0.93452 0.96630 0.89111 1.18004 0.90485 0.83904 0.94631 0.92683 1.59544 1.11078 1.12617 1.54954 1.21652 1.36893 1.05619 0.94170 0.92638 1.25008 0.94933 0.96045 0.97472 1.69725 1.40519 1.11522 1.31238 0.86549 0.78987 0.77676 0.84231 1.20026 1.21081 1.20189 0.92016 0.88934 0.92614 0.84028 0.84001 0.85077 0.87802 0.82636 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.00 9.35 36.01 0.34 -1.67 15 2 C -0.14 -2.73 5.90 -104.48 -0.62 -3.35 15 3 C 0.08 1.49 10.86 -17.55 -0.19 1.30 15 4 N -0.51 -9.66 10.36 -13.26 -0.14 -9.80 15 5 C 0.07 1.34 11.18 -17.55 -0.20 1.15 15 6 C -0.16 -3.19 9.32 -39.44 -0.37 -3.56 15 7 C 0.01 0.17 5.05 -104.32 -0.53 -0.35 15 8 C 0.24 5.77 2.30 -70.01 -0.16 5.61 15 9 H 0.06 1.45 7.39 -51.93 -0.38 1.06 15 10 N -0.85 -19.69 8.69 -6.65 -0.06 -19.74 15 11 C -0.54 -14.02 7.63 -34.44 -0.26 -14.28 15 12 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 13 C 0.07 1.77 5.38 -17.82 -0.10 1.68 15 14 N -0.89 -23.66 11.54 55.43 0.64 -23.02 15 15 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 15 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 15 17 H -0.29 -6.42 7.11 56.52 0.40 -6.02 15 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 19 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 20 H 0.09 1.89 6.11 -51.93 -0.32 1.58 15 21 H 0.05 0.84 8.09 -51.93 -0.42 0.42 15 22 H 0.14 2.16 8.06 -52.49 -0.42 1.73 15 23 H 0.14 2.10 8.06 -52.49 -0.42 1.67 15 24 H 0.13 2.43 6.39 -52.49 -0.34 2.10 15 25 H 0.31 6.84 7.36 -39.29 -0.29 6.55 15 26 H 0.36 8.82 7.08 -39.29 -0.28 8.54 15 27 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 LS Contribution 231.16 15.07 3.48 3.48 Total: -1.00 -27.12 231.16 -6.01 -33.13 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -2.83 Total: 14.09 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.08 Total: -13.48 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: 0.44 Total: -52.56 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -27.12 -6.01 -33.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104674668.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.851 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds