Wall clock time and date at job start Mon Mar 30 2020 02:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86799 * 120.00002 * 2 1 4 4 H 1.48505 * 109.47116 * 240.00481 * 3 2 1 5 5 H 1.48503 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47266 * 120.00114 * 3 2 1 7 7 C 1.39938 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99913 * 162.96833 * 7 2 1 9 9 C 1.41453 * 120.00163 * 342.97460 * 7 2 1 10 10 C 1.40810 * 120.59485 * 155.84110 * 9 7 2 11 11 N 1.31534 * 120.72968 * 179.97438 * 10 9 7 12 12 C 1.31885 * 122.16186 * 359.97438 * 11 10 9 13 13 C 1.39888 * 121.11989 * 359.97438 * 12 11 10 14 14 C 1.47764 * 120.43911 * 180.02562 * 13 12 11 15 15 O 1.21470 * 119.99972 * 180.02562 * 14 13 12 16 16 O 1.34703 * 120.00114 * 0.02562 * 14 13 12 17 17 C 1.39514 * 119.12196 * 0.02562 * 13 12 11 18 18 H 0.97002 * 119.99999 * 359.97438 * 1 2 3 19 19 H 1.07995 * 119.63715 * 359.97438 * 10 9 7 20 20 H 1.08000 * 119.44085 * 180.02562 * 12 11 10 21 21 H 0.96695 * 116.99938 * 179.97438 * 16 14 13 22 22 H 1.08005 * 120.97566 * 180.24674 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6964 1.2124 7 6 2.0080 -1.2119 -0.0005 8 1 3.0525 -1.2323 -0.2745 9 6 1.3472 -2.4103 0.3576 10 6 1.8234 -3.6548 -0.0975 11 7 1.2114 -4.7708 0.2343 12 6 0.1369 -4.7816 0.9990 13 6 -0.4071 -3.5935 1.4984 14 6 -1.6112 -3.6231 2.3544 15 8 -2.0771 -2.5866 2.7833 16 8 -2.1922 -4.7996 2.6591 17 6 0.2024 -2.3802 1.1776 18 1 -0.4850 0.8401 0.0004 19 1 2.7009 -3.6935 -0.7259 20 1 -0.3305 -5.7237 1.2445 21 1 -2.9774 -4.7685 3.2225 22 1 -0.1900 -1.4454 1.5500 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000143009116.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:27 Heat of formation + Delta-G solvation = -95.975108 kcal Electronic energy + Delta-G solvation = -11367.807451 eV Core-core repulsion = 9079.253030 eV Total energy + Delta-G solvation = -2288.554421 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.29877 -39.85504 -37.04045 -36.05158 -32.80958 -32.29501 -27.64434 -25.76489 -23.67105 -22.11438 -19.77443 -18.76534 -17.84687 -17.14065 -17.06248 -16.59182 -16.10617 -14.99279 -14.32948 -14.22634 -13.75697 -13.38030 -13.25891 -12.79406 -12.57866 -12.36448 -12.09702 -11.66953 -11.26211 -10.41285 -10.14817 -9.78074 -8.78855 -6.53774 -0.06399 0.82844 1.39206 1.48806 1.53295 1.73744 2.15584 2.17701 2.66687 3.54583 3.99231 4.33834 4.46262 4.62661 4.79827 5.03760 5.11757 5.49221 5.59939 5.75798 5.81240 6.31036 6.59781 6.65183 7.04583 7.50016 8.16192 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.044633 B = 0.012501 C = 0.010028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.181645 B = 2239.280884 C = 2791.628194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.250 1.250 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.471 4.471 8 H 0.100 0.900 9 C 0.027 3.973 10 C -0.003 4.003 11 N -0.480 5.480 12 C 0.013 3.987 13 C -0.170 4.170 14 C 0.542 3.458 15 O -0.554 6.554 16 O -0.497 6.497 17 C -0.094 4.094 18 H 0.294 0.706 19 H 0.153 0.847 20 H 0.165 0.835 21 H 0.429 0.571 22 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.503 -1.446 2.260 2.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.186 4.186 3 Si 0.812 3.188 4 H -0.174 1.174 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.499 4.499 8 H 0.118 0.882 9 C 0.022 3.978 10 C -0.163 4.163 11 N -0.187 5.187 12 C -0.145 4.145 13 C -0.174 4.174 14 C 0.388 3.612 15 O -0.447 6.447 16 O -0.310 6.310 17 C -0.120 4.120 18 H 0.105 0.895 19 H 0.170 0.830 20 H 0.182 0.818 21 H 0.291 0.709 22 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.188 -1.845 1.806 2.589 hybrid contribution -0.832 1.575 0.662 1.900 sum -1.020 -0.270 2.468 2.684 Atomic orbital electron populations 1.69818 1.09481 1.31614 1.33408 1.26988 0.95464 1.05345 0.90822 0.85080 0.78593 0.74593 0.80552 1.17412 1.19621 1.18208 1.19919 0.98839 0.91131 1.40035 0.88158 1.18800 0.92559 0.95301 0.91109 1.23043 1.02556 0.87544 1.03160 1.67113 1.08336 1.31425 1.11865 1.22479 0.95235 0.96329 1.00473 1.20040 0.96756 0.96669 1.03917 1.20896 0.82598 0.80773 0.76908 1.90809 1.64775 1.35747 1.53376 1.84543 1.46573 1.32869 1.67008 1.21918 0.97228 0.96062 0.96780 0.89493 0.82959 0.81787 0.70938 0.86171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.98 10.94 21.83 0.24 -41.74 14 2 C 0.03 1.46 5.18 85.25 0.44 1.90 14 3 Si 0.99 35.88 29.59 68.60 2.03 37.91 14 4 H -0.25 -8.53 7.11 99.48 0.71 -7.82 14 5 H -0.27 -9.53 7.11 99.48 0.71 -8.82 14 6 H -0.26 -9.13 7.11 99.48 0.71 -8.43 14 7 C -0.47 -23.52 9.08 23.47 0.21 -23.30 14 8 H 0.10 4.59 7.90 -2.91 -0.02 4.57 14 9 C 0.03 1.39 5.59 -21.22 -0.12 1.27 14 10 C 0.00 -0.13 10.96 85.37 0.94 0.80 14 11 N -0.48 -22.43 10.32 -192.61 -1.99 -24.42 14 12 C 0.01 0.59 10.78 85.08 0.92 1.51 14 13 C -0.17 -8.05 5.88 -20.05 -0.12 -8.16 14 14 C 0.54 22.56 8.28 70.34 0.58 23.14 14 15 O -0.55 -26.07 17.19 19.93 0.34 -25.73 14 16 O -0.50 -14.86 12.69 -56.13 -0.71 -15.57 14 17 C -0.09 -4.98 8.34 23.22 0.19 -4.79 14 18 H 0.29 13.77 8.30 -92.71 -0.77 13.00 14 19 H 0.15 6.50 8.06 -2.91 -0.02 6.48 14 20 H 0.17 6.18 7.60 -2.91 -0.02 6.16 14 21 H 0.43 7.82 9.11 -74.06 -0.67 7.15 14 22 H 0.12 6.84 5.90 -2.91 -0.02 6.82 14 Total: -1.00 -61.62 213.01 3.55 -58.07 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.59 Total: 19.10 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 3.05 Total: -7.63 kcal Atomic # 7 Polarization: -64.41 SS G_CDS: -1.75 Total: -66.15 kcal Atomic # 8 Polarization: -40.93 SS G_CDS: -0.37 Total: -41.30 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -61.62 3.55 -58.07 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000143009116.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.905 kcal (2) G-P(sol) polarization free energy of solvation -61.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds