Wall clock time and date at job start Mon Mar 30 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30521 * 1 3 3 Si 1.86799 * 120.00132 * 2 1 4 4 H 1.48499 * 109.47278 * 275.00429 * 3 2 1 5 5 H 1.48499 * 109.47039 * 35.00438 * 3 2 1 6 6 H 1.48496 * 109.46978 * 155.00474 * 3 2 1 7 7 C 1.40351 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00156 * 174.82543 * 7 2 1 9 9 C 1.41565 * 120.00181 * 355.09670 * 7 2 1 10 10 O 1.21959 * 119.99799 * 334.88858 * 9 7 2 11 11 C 1.47030 * 120.00130 * 154.89442 * 9 7 2 12 12 C 1.39784 * 120.89682 * 174.00728 * 11 9 7 13 13 C 1.39171 * 118.81609 * 179.97438 * 12 11 9 14 14 C 1.35938 * 120.74041 * 0.02562 * 13 12 11 15 15 N 1.34686 * 121.98864 * 359.97438 * 14 13 12 16 16 H 0.96995 * 119.45454 * 180.02562 * 15 14 13 17 17 C 1.34766 * 121.08870 * 359.71981 * 15 14 13 18 18 O 1.21824 * 120.41545 * 180.26962 * 17 15 14 19 19 H 0.97001 * 119.99804 * 359.97438 * 1 2 3 20 20 H 1.07996 * 120.59156 * 359.97438 * 12 11 9 21 21 H 1.07998 * 119.62544 * 179.97438 * 13 12 11 22 22 H 1.07997 * 119.00825 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3810 2.1075 -1.3947 5 1 1.4936 2.6198 0.8031 6 1 3.5856 1.4119 0.5916 7 6 2.0069 -1.2155 -0.0005 8 1 3.0836 -1.2174 -0.0849 9 6 1.3030 -2.4393 0.1037 10 8 0.2062 -2.4684 0.6363 11 6 1.8941 -3.6752 -0.4300 12 6 1.2751 -4.9122 -0.2284 13 6 1.8722 -6.0546 -0.7531 14 6 3.0369 -5.9725 -1.4494 15 7 3.6597 -4.7974 -1.6620 16 1 4.4893 -4.7813 -2.1644 17 6 3.1462 -3.6428 -1.1936 18 8 3.7173 -2.5862 -1.3973 19 1 -0.4850 0.8401 0.0004 20 1 0.3500 -4.9802 0.3247 21 1 1.4054 -7.0171 -0.6048 22 1 3.4756 -6.8767 -1.8446 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000147599447.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:12 Heat of formation + Delta-G solvation = -77.058813 kcal Electronic energy + Delta-G solvation = -11521.977238 eV Core-core repulsion = 9234.243089 eV Total energy + Delta-G solvation = -2287.734149 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 193.053 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.69507 -38.61221 -37.82360 -34.83096 -34.07548 -30.73948 -28.91818 -25.30729 -24.14064 -22.01458 -19.48031 -18.63801 -17.51973 -17.32081 -16.86278 -16.23936 -15.76373 -15.13921 -14.69226 -14.12590 -13.53025 -13.30555 -13.06673 -12.97633 -12.81981 -12.38539 -12.05604 -11.09324 -10.95580 -10.59889 -9.64675 -8.73416 -8.44315 -6.87336 -0.17598 1.06131 1.31186 1.32283 1.50102 2.09658 2.13905 2.23979 2.81540 3.65571 3.89060 4.04082 4.21544 4.45457 4.70630 5.17536 5.29152 5.43656 5.51818 5.89312 6.14764 6.23884 6.77982 6.82271 7.25162 8.21848 8.48516 Molecular weight = 193.05amu Principal moments of inertia in cm(-1) A = 0.056485 B = 0.012641 C = 0.010522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.586850 B = 2214.529127 C = 2660.564094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.026 3.974 3 Si 0.993 3.007 4 H -0.259 1.259 5 H -0.259 1.259 6 H -0.258 1.258 7 C -0.542 4.542 8 H 0.090 0.910 9 C 0.392 3.608 10 O -0.605 6.605 11 C -0.300 4.300 12 C 0.010 3.990 13 C -0.246 4.246 14 C 0.164 3.836 15 N -0.591 5.591 16 H 0.429 0.571 17 C 0.512 3.488 18 O -0.567 6.567 19 H 0.283 0.717 20 H 0.120 0.880 21 H 0.186 0.814 22 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.823 -12.369 -4.792 15.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.190 4.190 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.183 1.183 6 H -0.182 1.182 7 C -0.573 4.573 8 H 0.107 0.893 9 C 0.293 3.707 10 O -0.501 6.501 11 C -0.306 4.306 12 C -0.012 4.012 13 C -0.268 4.268 14 C 0.034 3.966 15 N -0.222 5.222 16 H 0.269 0.731 17 C 0.312 3.688 18 O -0.450 6.450 19 H 0.093 0.907 20 H 0.138 0.862 21 H 0.203 0.797 22 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 7.383 -11.650 -4.600 14.539 hybrid contribution 0.261 0.905 -0.093 0.947 sum 7.644 -10.745 -4.693 13.997 Atomic orbital electron populations 1.69935 1.09629 1.29952 1.34489 1.27172 0.95526 1.05338 0.91013 0.85101 0.78920 0.75242 0.79581 1.18347 1.18282 1.18214 1.21562 0.96832 0.92720 1.46226 0.89254 1.18168 0.85648 0.88021 0.78887 1.90405 1.24917 1.88654 1.46130 1.23452 0.99075 0.98161 1.09865 1.22157 0.96730 0.91529 0.90820 1.20931 0.99088 0.99429 1.07352 1.22815 0.92134 0.89607 0.92025 1.43246 1.25246 1.06856 1.46838 0.73070 1.18417 0.85973 0.83534 0.80899 1.90827 1.62956 1.30298 1.60884 0.90681 0.86187 0.79707 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -52.01 12.11 21.89 0.27 -51.75 14 2 C 0.03 1.57 5.45 85.40 0.47 2.04 14 3 Si 0.99 45.88 29.56 68.60 2.03 47.91 14 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 14 5 H -0.26 -10.98 7.11 99.48 0.71 -10.27 14 6 H -0.26 -11.68 7.11 99.48 0.71 -10.97 14 7 C -0.54 -35.34 8.13 23.61 0.19 -35.15 14 8 H 0.09 5.77 5.73 -2.91 -0.02 5.75 14 9 C 0.39 25.46 6.69 25.40 0.17 25.63 14 10 O -0.61 -42.82 15.51 -5.18 -0.08 -42.90 14 11 C -0.30 -15.27 6.08 -18.39 -0.11 -15.38 14 12 C 0.01 0.39 9.72 22.87 0.22 0.61 14 13 C -0.25 -5.71 9.95 21.96 0.22 -5.49 14 14 C 0.16 2.81 11.09 83.72 0.93 3.74 14 15 N -0.59 -15.47 5.20 -314.47 -1.63 -17.11 14 16 H 0.43 7.92 8.89 -92.71 -0.82 7.10 14 17 C 0.51 22.64 7.88 86.45 0.68 23.32 14 18 O -0.57 -29.93 14.59 -4.74 -0.07 -30.00 14 19 H 0.28 16.16 8.29 -92.71 -0.77 15.39 14 20 H 0.12 4.93 7.74 -2.91 -0.02 4.91 14 21 H 0.19 2.55 8.06 -2.91 -0.02 2.53 14 22 H 0.23 0.56 8.06 -2.91 -0.02 0.54 14 Total: -1.00 -93.90 210.03 3.72 -90.18 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: 0.44 Total: 4.36 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 2.77 Total: -0.69 kcal Atomic # 7 Polarization: -67.48 SS G_CDS: -1.37 Total: -68.85 kcal Atomic # 8 Polarization: -72.76 SS G_CDS: -0.15 Total: -72.91 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -93.90 3.72 -90.18 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000147599447.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.119 kcal (2) G-P(sol) polarization free energy of solvation -93.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds