Wall clock time and date at job start Mon Mar 30 2020 01:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31026 * 1 3 3 Si 1.86800 * 120.00021 * 2 1 4 4 H 1.48501 * 109.46881 * 274.97369 * 3 2 1 5 5 H 1.48498 * 109.47033 * 34.97008 * 3 2 1 6 6 H 1.48491 * 109.47209 * 154.97753 * 3 2 1 7 7 C 1.39716 * 119.99687 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99835 * 186.03180 * 7 2 1 9 9 C 1.41223 * 120.00291 * 6.02856 * 7 2 1 10 10 N 1.36266 * 126.56316 * 354.33286 * 9 7 2 11 11 C 1.30424 * 109.19316 * 179.97438 * 10 9 7 12 12 N 1.35467 * 109.49534 * 359.95670 * 11 10 9 13 13 C 1.36364 * 107.66437 * 0.08253 * 12 11 10 14 14 C 1.50606 * 124.53001 * 179.86757 * 13 12 11 15 15 C 1.53516 * 108.06870 * 344.41341 * 14 13 12 16 16 C 1.53132 * 109.22860 * 48.43882 * 15 14 13 17 17 C 1.46563 * 128.12298 * 180.15033 * 12 11 10 18 18 H 0.96998 * 119.99502 * 0.02562 * 1 2 3 19 19 H 1.07997 * 125.24974 * 179.97438 * 11 10 9 20 20 H 1.09004 * 109.74428 * 224.77138 * 14 13 12 21 21 H 1.08996 * 109.74483 * 104.05688 * 14 13 12 22 22 H 1.09000 * 109.50688 * 288.51394 * 15 14 13 23 23 H 1.09001 * 109.51062 * 168.36814 * 15 14 13 24 24 H 1.09001 * 109.42551 * 170.25915 * 16 15 14 25 25 H 1.08998 * 109.43198 * 50.40772 * 16 15 14 26 26 H 1.08994 * 109.59625 * 282.34687 * 17 12 11 27 27 H 1.09004 * 109.59166 * 42.79755 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 2.3866 2.1071 -1.3948 5 1 1.4982 2.6200 0.8024 6 1 3.5904 1.4121 0.5922 7 6 2.0088 -1.2100 0.0005 8 1 3.0843 -1.2126 0.0988 9 6 1.3085 -2.4297 -0.1274 10 7 -0.0444 -2.5904 -0.1508 11 6 -0.3235 -3.8576 -0.2819 12 7 0.8271 -4.5693 -0.3497 13 6 1.8643 -3.6893 -0.2530 14 6 3.3191 -4.0777 -0.2828 15 6 3.4129 -5.5910 -0.0422 16 6 2.4200 -6.3100 -0.9599 17 6 0.9872 -6.0184 -0.5005 18 1 -0.4849 0.8401 -0.0004 19 1 -1.3184 -4.2751 -0.3294 20 1 3.8583 -3.5461 0.5013 21 1 3.7459 -3.8324 -1.2553 22 1 3.1715 -5.8098 0.9980 23 1 4.4245 -5.9325 -0.2616 24 1 2.6020 -7.3840 -0.9202 25 1 2.5516 -5.9582 -1.9831 26 1 0.8031 -6.5079 0.4557 27 1 0.2822 -6.3885 -1.2449 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150277185.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:52 Heat of formation + Delta-G solvation = 44.439808 kcal Electronic energy + Delta-G solvation = -11856.604789 eV Core-core repulsion = 9807.690973 eV Total energy + Delta-G solvation = -2048.913816 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 192.096 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.23431 -35.62994 -33.17335 -31.38484 -29.07718 -27.59651 -24.34157 -23.29917 -20.94553 -19.78590 -17.82003 -16.79078 -15.18576 -14.83602 -14.46542 -13.55722 -13.32384 -12.97137 -12.72945 -12.40470 -12.19125 -11.18694 -10.97870 -10.91262 -10.53209 -10.34928 -10.28981 -10.08522 -9.74834 -9.04246 -7.91436 -7.78153 -6.77980 -6.12045 -3.87885 3.19204 3.31060 3.34809 3.63040 4.16008 4.31682 4.73732 5.08649 5.16471 5.32829 5.72604 5.81540 5.85013 5.93748 6.03972 6.07978 6.24768 6.36177 6.54462 6.74226 6.85056 7.31727 7.61735 7.90847 8.12405 8.54647 8.89139 9.23468 9.43547 10.12480 10.82758 Molecular weight = 192.10amu Principal moments of inertia in cm(-1) A = 0.058576 B = 0.011871 C = 0.010056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.900552 B = 2358.087472 C = 2783.743098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.075 3.925 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.453 4.453 8 H 0.074 0.926 9 C 0.203 3.797 10 N -0.462 5.462 11 C 0.137 3.863 12 N -0.470 5.470 13 C -0.197 4.197 14 C -0.006 4.006 15 C -0.119 4.119 16 C -0.126 4.126 17 C 0.118 3.882 18 H 0.264 0.736 19 H 0.171 0.829 20 H 0.062 0.938 21 H 0.050 0.950 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.615 -8.982 -1.020 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.488 4.488 8 H 0.092 0.908 9 C 0.079 3.921 10 N -0.184 5.184 11 C -0.143 4.143 12 N -0.163 5.163 13 C -0.304 4.304 14 C -0.044 4.044 15 C -0.157 4.157 16 C -0.163 4.163 17 C -0.007 4.007 18 H 0.075 0.925 19 H 0.188 0.812 20 H 0.081 0.919 21 H 0.068 0.932 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.838 -8.340 -0.963 8.862 hybrid contribution 0.756 -0.010 -0.102 0.763 sum 3.594 -8.350 -1.065 9.152 Atomic orbital electron populations 1.70121 1.06631 1.26720 1.36661 1.25765 0.94696 1.00059 0.93732 0.86486 0.80362 0.82278 0.78456 1.20114 1.20749 1.19074 1.18437 0.93565 0.88546 1.48235 0.90813 1.18036 0.87408 0.90621 0.95998 1.71411 1.15477 1.11606 1.19922 1.24788 0.90269 0.89124 1.10080 1.44722 1.07145 1.04982 1.59445 1.20716 0.88610 0.90385 1.30691 1.19537 0.91774 0.92800 1.00319 1.21619 0.97883 0.97044 0.99145 1.21749 0.94250 0.99805 1.00543 1.21493 0.97467 0.81398 1.00306 0.92503 0.81209 0.91950 0.93168 0.92357 0.92359 0.91418 0.91451 0.92167 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.06 11.98 55.54 0.67 -22.39 15 2 C 0.08 2.13 5.49 -17.34 -0.10 2.04 15 3 Si 0.90 20.72 29.56 -169.99 -5.03 15.69 15 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 15 5 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 7 C -0.45 -13.27 9.23 -37.90 -0.35 -13.62 15 8 H 0.07 2.04 7.85 -52.49 -0.41 1.63 15 9 C 0.20 5.92 6.67 -84.76 -0.57 5.36 15 10 N -0.46 -13.48 9.56 -12.19 -0.12 -13.59 15 11 C 0.14 3.32 12.61 -90.05 -1.14 2.19 15 12 N -0.47 -10.43 3.14 -112.88 -0.35 -10.78 15 13 C -0.20 -4.90 6.69 -80.62 -0.54 -5.43 15 14 C -0.01 -0.12 6.15 -27.66 -0.17 -0.29 15 15 C -0.12 -1.89 5.97 -26.40 -0.16 -2.05 15 16 C -0.13 -1.83 5.91 -26.53 -0.16 -1.98 15 17 C 0.12 1.90 7.00 -3.87 -0.03 1.88 15 18 H 0.26 7.23 8.30 -40.82 -0.34 6.89 15 19 H 0.17 3.37 8.06 -52.49 -0.42 2.94 15 20 H 0.06 1.27 8.14 -51.93 -0.42 0.85 15 21 H 0.05 1.00 8.14 -51.93 -0.42 0.58 15 22 H 0.06 0.94 8.12 -51.93 -0.42 0.51 15 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 15 24 H 0.07 0.77 8.14 -51.93 -0.42 0.34 15 25 H 0.07 1.03 8.11 -51.93 -0.42 0.61 15 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 15 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 LS Contribution 230.57 15.07 3.47 3.47 Total: -1.00 -33.31 230.57 -7.90 -41.21 By element: Atomic # 1 Polarization: 1.66 SS G_CDS: -3.35 Total: -1.69 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -3.20 Total: -11.92 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.19 Total: -46.77 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -33.31 -7.90 -41.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150277185.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.648 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds