Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 N 1.31391 * 122.52186 * 202.54749 * 3 2 1 5 5 C 1.31541 * 115.82430 * 179.97438 * 4 3 2 6 6 C 1.39863 * 125.25883 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00362 * 180.02562 * 6 5 4 8 8 C 1.40153 * 119.99932 * 359.74693 * 6 5 4 9 9 N 1.30744 * 120.00066 * 0.27845 * 8 6 5 10 10 Si 1.86798 * 120.00307 * 180.27669 * 8 6 5 11 11 H 1.48496 * 109.47359 * 59.99964 * 10 8 6 12 12 H 1.48498 * 109.47590 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46858 * 300.00234 * 10 8 6 14 14 S 1.75968 * 109.48461 * 0.24413 * 5 4 3 15 15 C 1.37505 * 122.52006 * 22.52650 * 3 2 1 16 16 C 1.50704 * 125.46668 * 0.02562 * 15 3 2 17 17 H 4.50085 * 13.13883 * 359.97438 * 4 2 1 18 18 H 0.97005 * 120.00071 * 179.97438 * 9 8 6 19 19 H 1.08998 * 109.46977 * 89.99651 * 16 15 3 20 20 H 1.08996 * 109.46902 * 210.00675 * 16 15 3 21 21 H 1.09002 * 109.47020 * 330.00016 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 7 3.3119 1.0241 0.4248 5 6 4.6184 0.8828 0.3665 6 6 5.5530 1.8440 0.7649 7 1 6.6097 1.6379 0.6792 8 6 5.1183 3.0770 1.2700 9 7 3.8392 3.3266 1.3737 10 14 6.3666 4.3638 1.7949 11 1 7.2167 4.7312 0.6342 12 1 5.6558 5.5699 2.2900 13 1 7.2195 3.8128 2.8785 14 16 5.0085 -0.6994 -0.2975 15 6 3.3456 -1.0700 -0.4442 16 6 2.7814 -2.3606 -0.9800 17 1 -1.0500 -0.0007 -0.0008 18 1 3.5383 4.1799 1.7237 19 1 2.6455 -2.2778 -2.0583 20 1 3.4704 -3.1766 -0.7620 21 1 1.8199 -2.5609 -0.5070 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159696984.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 74.745522 kcal Electronic energy + Delta-G solvation = -9302.448018 eV Core-core repulsion = 7464.049470 eV Total energy + Delta-G solvation = -1838.398548 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.75683 -34.12955 -32.16221 -30.72382 -28.13560 -24.51542 -22.53475 -20.47061 -17.28430 -16.43755 -16.00912 -15.05675 -13.97325 -13.39362 -13.08705 -12.29712 -11.97268 -11.95207 -11.35040 -11.18605 -10.88226 -10.40083 -10.34227 -10.21062 -9.55801 -9.37381 -7.79316 -7.74751 -7.31340 -6.77017 -4.69672 2.11519 2.93702 2.93740 2.97862 3.17150 3.41984 3.57433 3.67690 3.80594 4.61933 5.16534 5.27392 6.14171 6.22553 6.34424 6.45754 6.70025 6.81645 7.10028 7.41761 7.87812 8.13300 8.33266 8.46136 9.77953 10.00833 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.049151 B = 0.012788 C = 0.010203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.536905 B = 2189.112062 C = 2743.498968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.066 4.066 3 C 0.201 3.799 4 N -0.518 5.518 5 C 0.230 3.770 6 C -0.381 4.381 7 H 0.097 0.903 8 C 0.067 3.933 9 N -0.702 5.702 10 Si 0.924 3.076 11 H -0.260 1.260 12 H -0.274 1.274 13 H -0.260 1.260 14 S -0.064 6.064 15 C -0.369 4.369 16 C -0.037 4.037 17 H 0.218 0.782 18 H 0.284 0.716 19 H 0.044 0.956 20 H 0.046 0.954 21 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.357 -1.610 -0.657 1.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.068 4.068 3 C 0.062 3.938 4 N -0.236 5.236 5 C -0.022 4.022 6 C -0.424 4.424 7 H 0.115 0.885 8 C -0.163 4.163 9 N -0.323 5.323 10 Si 0.747 3.253 11 H -0.185 1.185 12 H -0.198 1.198 13 H -0.184 1.184 14 S 0.195 5.805 15 C -0.494 4.494 16 C -0.096 4.096 17 H 0.234 0.766 18 H 0.096 0.904 19 H 0.062 0.938 20 H 0.065 0.935 21 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.969 -1.557 -0.644 1.943 hybrid contribution -0.698 0.534 0.211 0.903 sum 0.271 -1.023 -0.433 1.143 Atomic orbital electron populations 1.24433 0.95278 1.02684 1.02997 1.19464 0.91020 0.97892 0.98425 1.16170 0.88048 0.90275 0.99273 1.67680 1.02648 1.24721 1.28589 1.23879 0.91594 0.91512 0.95230 1.19011 0.93754 0.96481 1.33139 0.88452 1.26128 0.96288 0.99171 0.94724 1.70025 1.15151 1.22278 1.24867 0.86098 0.80333 0.78850 0.80058 1.18452 1.19826 1.18449 1.82972 1.07065 1.21237 1.69183 1.24099 0.95523 1.03162 1.26651 1.19654 0.98906 0.92365 0.98652 0.76550 0.90443 0.93751 0.93457 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.57 19.25 29.55 0.57 -4.00 14 2 C -0.07 -1.58 12.82 -38.84 -0.50 -2.07 14 3 C 0.20 5.41 6.53 -86.40 -0.56 4.84 14 4 N -0.52 -15.07 8.70 -10.85 -0.09 -15.16 14 5 C 0.23 6.33 7.04 -17.07 -0.12 6.21 14 6 C -0.38 -9.81 9.38 -38.26 -0.36 -10.17 14 7 H 0.10 2.26 7.85 -52.49 -0.41 1.85 14 8 C 0.07 1.64 5.50 -17.30 -0.10 1.55 14 9 N -0.70 -18.44 11.85 55.56 0.66 -17.78 14 10 Si 0.92 17.51 29.56 -169.99 -5.03 12.48 14 11 H -0.26 -4.82 7.11 56.52 0.40 -4.42 14 12 H -0.27 -5.06 7.11 56.52 0.40 -4.66 14 13 H -0.26 -4.82 7.11 56.52 0.40 -4.41 14 14 S -0.06 -1.55 23.10 -107.50 -2.48 -4.04 14 15 C -0.37 -9.08 6.46 -34.57 -0.22 -9.30 14 16 C -0.04 -0.73 10.06 36.01 0.36 -0.37 14 17 H 0.22 3.03 7.80 -54.09 -0.42 2.61 14 18 H 0.28 6.68 8.29 -40.82 -0.34 6.34 14 19 H 0.04 0.82 8.14 -51.93 -0.42 0.40 14 20 H 0.05 0.86 8.14 -51.93 -0.42 0.43 14 21 H 0.05 0.98 7.65 -51.93 -0.40 0.59 14 LS Contribution 219.46 15.07 3.31 3.31 Total: -1.00 -29.99 219.46 -5.78 -35.77 By element: Atomic # 1 Polarization: -0.06 SS G_CDS: -1.21 Total: -1.27 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.93 Total: -13.31 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.56 Total: -32.95 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.48 Total: -4.04 kcal Total LS contribution 3.31 Total: 3.31 kcal Total: -29.99 -5.78 -35.77 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159696984.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.513 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds