Wall clock time and date at job start Mon Mar 30 2020 02:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 N 1.31391 * 122.52186 * 202.54749 * 3 2 1 5 5 C 1.31541 * 115.82430 * 179.97438 * 4 3 2 6 6 C 1.39863 * 125.25883 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00362 * 180.02562 * 6 5 4 8 8 C 1.40153 * 119.99932 * 359.74693 * 6 5 4 9 9 N 1.30744 * 120.00066 * 0.27845 * 8 6 5 10 10 Si 1.86798 * 120.00307 * 180.27669 * 8 6 5 11 11 H 1.48496 * 109.47359 * 59.99964 * 10 8 6 12 12 H 1.48498 * 109.47590 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46858 * 300.00234 * 10 8 6 14 14 S 1.75968 * 109.48461 * 0.24413 * 5 4 3 15 15 C 1.37505 * 122.52006 * 22.52650 * 3 2 1 16 16 C 1.50704 * 125.46668 * 0.02562 * 15 3 2 17 17 H 4.50085 * 13.13883 * 359.97438 * 4 2 1 18 18 H 0.97005 * 120.00071 * 179.97438 * 9 8 6 19 19 H 1.08998 * 109.46977 * 89.99651 * 16 15 3 20 20 H 1.08996 * 109.46902 * 210.00675 * 16 15 3 21 21 H 1.09002 * 109.47020 * 330.00016 * 16 15 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 7 3.3119 1.0241 0.4248 5 6 4.6184 0.8828 0.3665 6 6 5.5530 1.8440 0.7649 7 1 6.6097 1.6379 0.6792 8 6 5.1183 3.0770 1.2700 9 7 3.8392 3.3266 1.3737 10 14 6.3666 4.3638 1.7949 11 1 7.2167 4.7312 0.6342 12 1 5.6558 5.5699 2.2900 13 1 7.2195 3.8128 2.8785 14 16 5.0085 -0.6994 -0.2975 15 6 3.3456 -1.0700 -0.4442 16 6 2.7814 -2.3606 -0.9800 17 1 -1.0500 -0.0007 -0.0008 18 1 3.5383 4.1799 1.7237 19 1 2.6455 -2.2778 -2.0583 20 1 3.4704 -3.1766 -0.7620 21 1 1.8199 -2.5609 -0.5070 RHF calculation, no. of doubly occupied orbitals= 31 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159696984.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:05 Heat of formation + Delta-G solvation = 55.639955 kcal Electronic energy + Delta-G solvation = -9303.276497 eV Core-core repulsion = 7464.049470 eV Total energy + Delta-G solvation = -1839.227027 eV No. of doubly occupied orbitals = 31 Molecular weight (most abundant/longest-lived isotopes) = 193.026 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.66670 -35.97214 -33.91887 -32.44990 -30.01571 -26.33992 -24.37875 -22.30514 -19.09612 -18.27946 -17.80630 -16.82571 -15.64304 -15.24040 -14.83257 -14.02929 -13.63580 -13.62819 -12.93600 -12.92095 -12.68113 -12.04320 -11.99549 -11.95958 -11.31966 -11.12824 -9.75421 -9.68495 -9.21434 -8.60628 -6.64911 0.25874 1.19412 1.40774 1.42789 1.55375 1.58979 1.83791 1.96034 2.18538 2.80104 3.35098 3.60103 4.50524 4.56561 4.76332 4.79735 5.02282 5.11022 5.32379 5.58913 5.98410 6.23551 6.52546 6.68977 7.85650 8.21516 Molecular weight = 193.03amu Principal moments of inertia in cm(-1) A = 0.049151 B = 0.012788 C = 0.010203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.536905 B = 2189.112062 C = 2743.498968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.157 4.157 3 C 0.169 3.831 4 N -0.561 5.561 5 C 0.191 3.809 6 C -0.405 4.405 7 H 0.114 0.886 8 C 0.023 3.977 9 N -0.749 5.749 10 Si 1.009 2.991 11 H -0.250 1.250 12 H -0.266 1.266 13 H -0.250 1.250 14 S -0.045 6.045 15 C -0.378 4.378 16 C -0.032 4.032 17 H 0.275 0.725 18 H 0.292 0.708 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -1.538 -0.636 1.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.032 3.968 4 N -0.281 5.281 5 C -0.061 4.061 6 C -0.448 4.448 7 H 0.132 0.868 8 C -0.203 4.203 9 N -0.371 5.371 10 Si 0.826 3.174 11 H -0.174 1.174 12 H -0.190 1.190 13 H -0.174 1.174 14 S 0.215 5.785 15 C -0.503 4.503 16 C -0.091 4.091 17 H 0.290 0.710 18 H 0.103 0.897 19 H 0.076 0.924 20 H 0.083 0.917 21 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.687 -1.525 -0.640 1.791 hybrid contribution -0.748 0.438 0.174 0.884 sum -0.061 -1.087 -0.466 1.184 Atomic orbital electron populations 1.25650 0.95923 0.98226 0.98311 1.19813 0.91566 1.02072 1.02522 1.16682 0.89945 0.90473 0.99719 1.67670 1.03624 1.26544 1.30234 1.24404 0.92023 0.93301 0.96338 1.19574 0.94437 0.97278 1.33486 0.86800 1.27299 0.98362 1.00977 0.93695 1.70136 1.17750 1.23387 1.25831 0.84860 0.77206 0.75382 0.79936 1.17375 1.19050 1.17363 1.82637 1.07299 1.19682 1.68925 1.24754 0.95478 1.04412 1.25655 1.19728 0.99520 0.90558 0.99292 0.70964 0.89745 0.92372 0.91748 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 19.25 74.32 1.43 -4.43 14 2 C -0.16 -7.54 12.82 30.01 0.38 -7.15 14 3 C 0.17 9.32 6.53 40.28 0.26 9.58 14 4 N -0.56 -33.85 8.70 -188.23 -1.64 -35.48 14 5 C 0.19 10.86 7.04 85.13 0.60 11.46 14 6 C -0.40 -21.26 9.38 23.13 0.22 -21.05 14 7 H 0.11 5.33 7.85 -2.91 -0.02 5.31 14 8 C 0.02 1.12 5.50 85.32 0.47 1.59 14 9 N -0.75 -40.37 11.85 21.86 0.26 -40.11 14 10 Si 1.01 35.44 29.56 68.60 2.03 37.47 14 11 H -0.25 -8.32 7.11 99.48 0.71 -7.61 14 12 H -0.27 -8.93 7.11 99.48 0.71 -8.22 14 13 H -0.25 -8.31 7.11 99.48 0.71 -7.60 14 14 S -0.04 -2.21 23.10 -56.49 -1.31 -3.51 14 15 C -0.38 -18.74 6.46 25.51 0.16 -18.57 14 16 C -0.03 -1.23 10.06 71.24 0.72 -0.51 14 17 H 0.27 6.08 7.80 -4.42 -0.03 6.04 14 18 H 0.29 14.00 8.29 -92.70 -0.77 13.23 14 19 H 0.06 2.07 8.14 -2.39 -0.02 2.05 14 20 H 0.06 2.22 8.14 -2.39 -0.02 2.21 14 21 H 0.06 2.25 7.65 -2.39 -0.02 2.23 14 Total: -1.00 -67.93 219.46 4.83 -63.10 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.24 Total: 7.63 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 4.25 Total: -29.09 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -1.38 Total: -75.59 kcal Atomic # 14 Polarization: 35.44 SS G_CDS: 2.03 Total: 37.47 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -1.31 Total: -3.51 kcal Total: -67.93 4.83 -63.10 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159696984.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.741 kcal (2) G-P(sol) polarization free energy of solvation -67.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds